Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
UPK1AO00322 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
UPK1AO00322 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
UPK1AO00322 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
UPK1AO00322 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.65■□□□□ 0.9
UPK1AO00322 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.65■□□□□ 0.9
UPK1AO00322 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.65■□□□□ 0.9
UPK1AO00322 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.65■□□□□ 0.9
UPK1AO00322 AC006455.2-201ENST00000429931 906 ntBASIC20.65■□□□□ 0.9
UPK1AO00322 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.65■□□□□ 0.9
UPK1AO00322 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
UPK1AO00322 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.64■□□□□ 0.9
UPK1AO00322 AC004687.1-201ENST00000579003 1625 ntBASIC20.64■□□□□ 0.9
UPK1AO00322 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.64■□□□□ 0.9
UPK1AO00322 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UPK1AO00322 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.64■□□□□ 0.89
UPK1AO00322 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UPK1AO00322 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
UPK1AO00322 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.64■□□□□ 0.89
UPK1AO00322 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.64■□□□□ 0.89
UPK1AO00322 SRD5A1P1-201ENST00000442297 786 ntBASIC20.64■□□□□ 0.89
UPK1AO00322 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.64■□□□□ 0.89
UPK1AO00322 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
UPK1AO00322 MIR4466-201ENST00000606121 54 ntBASIC20.64■□□□□ 0.89
UPK1AO00322 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
UPK1AO00322 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
UPK1AO00322 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
UPK1AO00322 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UPK1AO00322 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
UPK1AO00322 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UPK1AO00322 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.64■□□□□ 0.89
UPK1AO00322 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
UPK1AO00322 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
UPK1AO00322 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.63■□□□□ 0.89
UPK1AO00322 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
UPK1AO00322 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
UPK1AO00322 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.63■□□□□ 0.89
UPK1AO00322 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
UPK1AO00322 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
UPK1AO00322 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
UPK1AO00322 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
UPK1AO00322 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
UPK1AO00322 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UPK1AO00322 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
UPK1AO00322 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UPK1AO00322 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
UPK1AO00322 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
UPK1AO00322 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
UPK1AO00322 AC131281.2-201ENST00000520478 145 ntBASIC20.62■□□□□ 0.89
UPK1AO00322 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UPK1AO00322 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.62■□□□□ 0.89
UPK1AO00322 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
UPK1AO00322 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.61■□□□□ 0.89
UPK1AO00322 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UPK1AO00322 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
UPK1AO00322 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
UPK1AO00322 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UPK1AO00322 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.61■□□□□ 0.89
UPK1AO00322 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
UPK1AO00322 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.61■□□□□ 0.89
UPK1AO00322 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.61■□□□□ 0.89
UPK1AO00322 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
UPK1AO00322 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
UPK1AO00322 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.61■□□□□ 0.89
UPK1AO00322 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
UPK1AO00322 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.61■□□□□ 0.89
UPK1AO00322 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
UPK1AO00322 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UPK1AO00322 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
UPK1AO00322 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
UPK1AO00322 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
UPK1AO00322 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UPK1AO00322 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.6■□□□□ 0.89
UPK1AO00322 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.6■□□□□ 0.89
UPK1AO00322 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.6■□□□□ 0.89
UPK1AO00322 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.6■□□□□ 0.89
UPK1AO00322 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.6■□□□□ 0.89
UPK1AO00322 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
UPK1AO00322 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.6■□□□□ 0.89
UPK1AO00322 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
UPK1AO00322 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UPK1AO00322 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.6■□□□□ 0.89
UPK1AO00322 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
UPK1AO00322 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UPK1AO00322 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
UPK1AO00322 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.59■□□□□ 0.89
UPK1AO00322 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
UPK1AO00322 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.59■□□□□ 0.89
UPK1AO00322 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
UPK1AO00322 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UPK1AO00322 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
UPK1AO00322 pRNA.6-201ENST00000610482 90 ntBASIC20.59■□□□□ 0.89
UPK1AO00322 pRNA.5-201ENST00000612139 90 ntBASIC20.59■□□□□ 0.89
UPK1AO00322 pRNA.11-201ENST00000618423 90 ntBASIC20.59■□□□□ 0.89
UPK1AO00322 pRNA.13-201ENST00000619112 90 ntBASIC20.59■□□□□ 0.89
UPK1AO00322 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
UPK1AO00322 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
UPK1AO00322 FAM99A-202ENST00000538190 1989 ntBASIC20.58■□□□□ 0.89
UPK1AO00322 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
UPK1AO00322 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms