Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC22.24■■□□□ 1.15
CBX4O00257 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC22.24■■□□□ 1.15
CBX4O00257 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CBX4O00257 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CBX4O00257 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CBX4O00257 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC22.23■■□□□ 1.15
CBX4O00257 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
CBX4O00257 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CBX4O00257 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CBX4O00257 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CBX4O00257 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC22.23■■□□□ 1.15
CBX4O00257 AC012414.1-201ENST00000556676 535 ntBASIC22.23■■□□□ 1.15
CBX4O00257 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CBX4O00257 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC22.23■■□□□ 1.15
CBX4O00257 MIR6084-201ENST00000622012 110 ntBASIC22.23■■□□□ 1.15
CBX4O00257 AL358852.1-201ENST00000623174 1268 ntBASIC22.23■■□□□ 1.15
CBX4O00257 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CBX4O00257 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC22.23■■□□□ 1.15
CBX4O00257 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CBX4O00257 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CBX4O00257 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC22.22■■□□□ 1.15
CBX4O00257 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
CBX4O00257 AK1-201ENST00000223836 736 ntTSL 3 BASIC22.22■■□□□ 1.15
CBX4O00257 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CBX4O00257 GLI3-203ENST00000437480 451 ntTSL 2 BASIC22.22■■□□□ 1.15
CBX4O00257 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC22.22■■□□□ 1.15
CBX4O00257 AL354811.1-201ENST00000610286 706 ntBASIC22.22■■□□□ 1.15
CBX4O00257 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CBX4O00257 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CBX4O00257 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CBX4O00257 AC087742.1-201ENST00000575880 1738 ntBASIC22.22■■□□□ 1.15
CBX4O00257 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC22.22■■□□□ 1.15
CBX4O00257 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC22.22■■□□□ 1.15
CBX4O00257 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
CBX4O00257 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CBX4O00257 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CBX4O00257 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC22.21■■□□□ 1.15
CBX4O00257 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CBX4O00257 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
CBX4O00257 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CBX4O00257 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC22.2■■□□□ 1.14
CBX4O00257 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CBX4O00257 SP2-202ENST00000613139 908 ntTSL 5 BASIC22.2■■□□□ 1.14
CBX4O00257 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CBX4O00257 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC22.2■■□□□ 1.14
CBX4O00257 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CBX4O00257 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC22.2■■□□□ 1.14
CBX4O00257 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CBX4O00257 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
CBX4O00257 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC22.19■■□□□ 1.14
CBX4O00257 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CBX4O00257 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CBX4O00257 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CBX4O00257 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CBX4O00257 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC22.19■■□□□ 1.14
CBX4O00257 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC22.19■■□□□ 1.14
CBX4O00257 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CBX4O00257 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC22.19■■□□□ 1.14
CBX4O00257 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC22.19■■□□□ 1.14
CBX4O00257 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CBX4O00257 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC22.19■■□□□ 1.14
CBX4O00257 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CBX4O00257 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
CBX4O00257 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
CBX4O00257 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC22.18■■□□□ 1.14
CBX4O00257 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CBX4O00257 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CBX4O00257 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CBX4O00257 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CBX4O00257 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC22.18■■□□□ 1.14
CBX4O00257 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CBX4O00257 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CBX4O00257 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC22.18■■□□□ 1.14
CBX4O00257 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
CBX4O00257 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
CBX4O00257 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CBX4O00257 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
CBX4O00257 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CBX4O00257 MPST-204ENST00000404393 1329 ntTSL 5 BASIC22.17■■□□□ 1.14
CBX4O00257 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CBX4O00257 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC22.17■■□□□ 1.14
CBX4O00257 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CBX4O00257 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC22.17■■□□□ 1.14
CBX4O00257 SMUG1P1-201ENST00000590640 811 ntBASIC22.17■■□□□ 1.14
CBX4O00257 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CBX4O00257 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CBX4O00257 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CBX4O00257 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
CBX4O00257 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
CBX4O00257 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC22.16■■□□□ 1.14
CBX4O00257 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CBX4O00257 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
CBX4O00257 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
CBX4O00257 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CBX4O00257 MFF-208ENST00000409616 1247 ntTSL 5 BASIC22.16■■□□□ 1.14
CBX4O00257 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC22.16■■□□□ 1.14
CBX4O00257 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC22.16■■□□□ 1.14
CBX4O00257 AC079089.2-201ENST00000531211 1277 ntBASIC22.16■■□□□ 1.14
CBX4O00257 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC22.16■■□□□ 1.14
CBX4O00257 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms