Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A5A8TX70 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A5A8TX70 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
COL6A5A8TX70 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A5A8TX70 BX276092.2-201ENST00000417668 665 ntBASIC17.21■□□□□ 0.35
COL6A5A8TX70 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A5A8TX70 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC17.21■□□□□ 0.35
COL6A5A8TX70 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A5A8TX70 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.21■□□□□ 0.35
COL6A5A8TX70 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A5A8TX70 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A5A8TX70 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
COL6A5A8TX70 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
COL6A5A8TX70 SNORA78-201ENST00000459373 127 ntBASIC17.21■□□□□ 0.35
COL6A5A8TX70 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A5A8TX70 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.21■□□□□ 0.35
COL6A5A8TX70 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A5A8TX70 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A5A8TX70 AC097493.4-201ENST00000641197 219 ntBASIC17.21■□□□□ 0.35
COL6A5A8TX70 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL6A5A8TX70 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.34
COL6A5A8TX70 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
COL6A5A8TX70 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
COL6A5A8TX70 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A5A8TX70 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A5A8TX70 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.2■□□□□ 0.34
COL6A5A8TX70 OR10C1-204ENST00000622521 1039 ntBASIC17.2■□□□□ 0.34
COL6A5A8TX70 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC17.2■□□□□ 0.34
COL6A5A8TX70 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.2■□□□□ 0.34
COL6A5A8TX70 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.2■□□□□ 0.34
COL6A5A8TX70 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A5A8TX70 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A5A8TX70 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A5A8TX70 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.19■□□□□ 0.34
COL6A5A8TX70 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A5A8TX70 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A5A8TX70 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A5A8TX70 AC068338.2-201ENST00000563278 1430 ntBASIC17.19■□□□□ 0.34
COL6A5A8TX70 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A5A8TX70 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A5A8TX70 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A5A8TX70 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A5A8TX70 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
COL6A5A8TX70 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A5A8TX70 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A5A8TX70 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A5A8TX70 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A5A8TX70 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A5A8TX70 AC091874.3-201ENST00000512672 1195 ntBASIC17.19■□□□□ 0.34
COL6A5A8TX70 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A5A8TX70 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.19■□□□□ 0.34
COL6A5A8TX70 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A5A8TX70 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
COL6A5A8TX70 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
COL6A5A8TX70 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
COL6A5A8TX70 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
COL6A5A8TX70 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A5A8TX70 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A5A8TX70 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A5A8TX70 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
COL6A5A8TX70 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A5A8TX70 AP003097.1-201ENST00000530657 1135 ntBASIC17.18■□□□□ 0.34
COL6A5A8TX70 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.18■□□□□ 0.34
COL6A5A8TX70 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC17.18■□□□□ 0.34
COL6A5A8TX70 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A5A8TX70 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A5A8TX70 EI24-204ENST00000527235 1625 ntTSL 5 BASIC17.18■□□□□ 0.34
COL6A5A8TX70 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.18■□□□□ 0.34
COL6A5A8TX70 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.18■□□□□ 0.34
COL6A5A8TX70 AC008694.1-202ENST00000636953 945 ntBASIC17.18■□□□□ 0.34
COL6A5A8TX70 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A5A8TX70 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL6A5A8TX70 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A5A8TX70 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A5A8TX70 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A5A8TX70 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC17.17■□□□□ 0.34
COL6A5A8TX70 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.17■□□□□ 0.34
COL6A5A8TX70 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.17■□□□□ 0.34
COL6A5A8TX70 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.17■□□□□ 0.34
COL6A5A8TX70 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A5A8TX70 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A5A8TX70 ALDH1A3-203ENST00000557963 1670 ntBASIC17.17■□□□□ 0.34
COL6A5A8TX70 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A5A8TX70 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A5A8TX70 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A5A8TX70 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL6A5A8TX70 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.17■□□□□ 0.34
COL6A5A8TX70 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.17■□□□□ 0.34
COL6A5A8TX70 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A5A8TX70 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A5A8TX70 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A5A8TX70 AL512625.2-201ENST00000417533 625 ntBASIC17.16■□□□□ 0.34
COL6A5A8TX70 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL6A5A8TX70 AC097658.1-201ENST00000475555 843 ntBASIC17.16■□□□□ 0.34
COL6A5A8TX70 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.16■□□□□ 0.34
COL6A5A8TX70 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.16■□□□□ 0.34
COL6A5A8TX70 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC17.16■□□□□ 0.34
COL6A5A8TX70 ARMC10P1-201ENST00000313754 855 ntBASIC17.16■□□□□ 0.34
COL6A5A8TX70 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC17.16■□□□□ 0.34
COL6A5A8TX70 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms