Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.68■□□□□ 0.74
HIF3AQ9Y2N7 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.68■□□□□ 0.74
HIF3AQ9Y2N7 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HIF3AQ9Y2N7 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
HIF3AQ9Y2N7 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.68■□□□□ 0.74
HIF3AQ9Y2N7 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.68■□□□□ 0.74
HIF3AQ9Y2N7 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC19.68■□□□□ 0.74
HIF3AQ9Y2N7 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.68■□□□□ 0.74
HIF3AQ9Y2N7 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.68■□□□□ 0.74
HIF3AQ9Y2N7 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.68■□□□□ 0.74
HIF3AQ9Y2N7 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HIF3AQ9Y2N7 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HIF3AQ9Y2N7 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HIF3AQ9Y2N7 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HIF3AQ9Y2N7 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 AC006455.2-201ENST00000429931 906 ntBASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.67■□□□□ 0.74
HIF3AQ9Y2N7 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 AC133637.1-201ENST00000624115 1537 ntBASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 CLDN5-201ENST00000403084 2357 ntBASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HIF3AQ9Y2N7 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 AC099791.2-201ENST00000605725 427 ntBASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 pRNA.6-201ENST00000610482 90 ntBASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 pRNA.5-201ENST00000612139 90 ntBASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 pRNA.11-201ENST00000618423 90 ntBASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 pRNA.13-201ENST00000619112 90 ntBASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HIF3AQ9Y2N7 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
HIF3AQ9Y2N7 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.64■□□□□ 0.74
HIF3AQ9Y2N7 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
HIF3AQ9Y2N7 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HIF3AQ9Y2N7 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.64■□□□□ 0.73
HIF3AQ9Y2N7 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HIF3AQ9Y2N7 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HIF3AQ9Y2N7 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.64■□□□□ 0.73
HIF3AQ9Y2N7 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HIF3AQ9Y2N7 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HIF3AQ9Y2N7 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HIF3AQ9Y2N7 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HIF3AQ9Y2N7 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms