Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
USB1Q9BQ65 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.33■□□□□ 0.69
USB1Q9BQ65 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
USB1Q9BQ65 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.69
USB1Q9BQ65 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USB1Q9BQ65 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC19.33■□□□□ 0.69
USB1Q9BQ65 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USB1Q9BQ65 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.33■□□□□ 0.68
USB1Q9BQ65 MIR6821-201ENST00000617625 74 ntBASIC19.33■□□□□ 0.68
USB1Q9BQ65 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.33■□□□□ 0.68
USB1Q9BQ65 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USB1Q9BQ65 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.33■□□□□ 0.68
USB1Q9BQ65 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
USB1Q9BQ65 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USB1Q9BQ65 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USB1Q9BQ65 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
USB1Q9BQ65 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USB1Q9BQ65 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.32■□□□□ 0.68
USB1Q9BQ65 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
USB1Q9BQ65 TSPY26P-201ENST00000476365 1326 ntBASIC19.32■□□□□ 0.68
USB1Q9BQ65 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.32■□□□□ 0.68
USB1Q9BQ65 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
USB1Q9BQ65 MIR572-201ENST00000384983 95 ntBASIC19.32■□□□□ 0.68
USB1Q9BQ65 AC097381.1-201ENST00000429019 1296 ntBASIC19.32■□□□□ 0.68
USB1Q9BQ65 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USB1Q9BQ65 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.32■□□□□ 0.68
USB1Q9BQ65 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
USB1Q9BQ65 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
USB1Q9BQ65 AC079630.1-202ENST00000618127 1840 ntBASIC19.32■□□□□ 0.68
USB1Q9BQ65 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
USB1Q9BQ65 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USB1Q9BQ65 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
USB1Q9BQ65 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USB1Q9BQ65 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.31■□□□□ 0.68
USB1Q9BQ65 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USB1Q9BQ65 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.31■□□□□ 0.68
USB1Q9BQ65 AL354811.1-201ENST00000610286 706 ntBASIC19.31■□□□□ 0.68
USB1Q9BQ65 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USB1Q9BQ65 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USB1Q9BQ65 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USB1Q9BQ65 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
USB1Q9BQ65 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USB1Q9BQ65 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.3■□□□□ 0.68
USB1Q9BQ65 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USB1Q9BQ65 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USB1Q9BQ65 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.3■□□□□ 0.68
USB1Q9BQ65 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USB1Q9BQ65 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USB1Q9BQ65 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.3■□□□□ 0.68
USB1Q9BQ65 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USB1Q9BQ65 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
USB1Q9BQ65 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USB1Q9BQ65 AC026271.2-201ENST00000428091 497 ntBASIC19.3■□□□□ 0.68
USB1Q9BQ65 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.3■□□□□ 0.68
USB1Q9BQ65 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.3■□□□□ 0.68
USB1Q9BQ65 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.3■□□□□ 0.68
USB1Q9BQ65 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USB1Q9BQ65 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.3■□□□□ 0.68
USB1Q9BQ65 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USB1Q9BQ65 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.3■□□□□ 0.68
USB1Q9BQ65 AC087239.1-201ENST00000622671 572 ntBASIC19.3■□□□□ 0.68
USB1Q9BQ65 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.3■□□□□ 0.68
USB1Q9BQ65 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
USB1Q9BQ65 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USB1Q9BQ65 DUSP8P5-201ENST00000422884 1815 ntBASIC19.3■□□□□ 0.68
USB1Q9BQ65 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.3■□□□□ 0.68
USB1Q9BQ65 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USB1Q9BQ65 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
USB1Q9BQ65 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USB1Q9BQ65 ABCB10P4-201ENST00000566803 2184 ntBASIC19.29■□□□□ 0.68
USB1Q9BQ65 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USB1Q9BQ65 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.29■□□□□ 0.68
USB1Q9BQ65 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.29■□□□□ 0.68
USB1Q9BQ65 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USB1Q9BQ65 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.29■□□□□ 0.68
USB1Q9BQ65 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USB1Q9BQ65 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USB1Q9BQ65 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.29■□□□□ 0.68
USB1Q9BQ65 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC19.28■□□□□ 0.68
USB1Q9BQ65 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
USB1Q9BQ65 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
USB1Q9BQ65 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USB1Q9BQ65 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
USB1Q9BQ65 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USB1Q9BQ65 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.28■□□□□ 0.68
USB1Q9BQ65 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
USB1Q9BQ65 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.28■□□□□ 0.68
USB1Q9BQ65 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.28■□□□□ 0.68
USB1Q9BQ65 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.28■□□□□ 0.68
USB1Q9BQ65 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.28■□□□□ 0.68
USB1Q9BQ65 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USB1Q9BQ65 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
USB1Q9BQ65 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
USB1Q9BQ65 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.28■□□□□ 0.68
USB1Q9BQ65 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
USB1Q9BQ65 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC19.28■□□□□ 0.68
USB1Q9BQ65 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.27■□□□□ 0.68
USB1Q9BQ65 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USB1Q9BQ65 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
USB1Q9BQ65 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms