Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SSX3Q99909 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SSX3Q99909 AC241377.3-202ENST00000626088 1088 ntBASIC18.17■□□□□ 0.5
SSX3Q99909 AC241585.3-202ENST00000628937 1088 ntBASIC18.17■□□□□ 0.5
SSX3Q99909 AC245100.8-202ENST00000629247 1058 ntBASIC18.17■□□□□ 0.5
SSX3Q99909 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SSX3Q99909 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SSX3Q99909 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SSX3Q99909 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SSX3Q99909 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC18.17■□□□□ 0.5
SSX3Q99909 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SSX3Q99909 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SSX3Q99909 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SSX3Q99909 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
SSX3Q99909 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC18.16■□□□□ 0.5
SSX3Q99909 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC18.16■□□□□ 0.5
SSX3Q99909 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.16■□□□□ 0.5
SSX3Q99909 AC024257.2-201ENST00000549699 147 ntBASIC18.16■□□□□ 0.5
SSX3Q99909 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SSX3Q99909 NKILA-201ENST00000613231 537 ntTSL 4 BASIC18.16■□□□□ 0.5
SSX3Q99909 SF1-220ENST00000626028 704 ntTSL 2 BASIC18.16■□□□□ 0.5
SSX3Q99909 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SSX3Q99909 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SSX3Q99909 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SSX3Q99909 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SSX3Q99909 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SSX3Q99909 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SSX3Q99909 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.16■□□□□ 0.5
SSX3Q99909 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.16■□□□□ 0.5
SSX3Q99909 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SSX3Q99909 AC233723.2-201ENST00000623798 2106 ntBASIC18.16■□□□□ 0.5
SSX3Q99909 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
SSX3Q99909 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SSX3Q99909 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SSX3Q99909 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SSX3Q99909 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSX3Q99909 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.15■□□□□ 0.5
SSX3Q99909 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SSX3Q99909 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC18.15■□□□□ 0.5
SSX3Q99909 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.15■□□□□ 0.5
SSX3Q99909 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSX3Q99909 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSX3Q99909 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSX3Q99909 C1orf229-201ENST00000623686 2258 ntBASIC18.15■□□□□ 0.5
SSX3Q99909 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
SSX3Q99909 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSX3Q99909 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSX3Q99909 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSX3Q99909 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SSX3Q99909 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC18.14■□□□□ 0.5
SSX3Q99909 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SSX3Q99909 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SSX3Q99909 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSX3Q99909 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSX3Q99909 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC18.14■□□□□ 0.49
SSX3Q99909 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC18.14■□□□□ 0.49
SSX3Q99909 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18.14■□□□□ 0.49
SSX3Q99909 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC18.14■□□□□ 0.49
SSX3Q99909 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.14■□□□□ 0.49
SSX3Q99909 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
SSX3Q99909 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSX3Q99909 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SSX3Q99909 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SSX3Q99909 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSX3Q99909 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSX3Q99909 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SSX3Q99909 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSX3Q99909 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC18.13■□□□□ 0.49
SSX3Q99909 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSX3Q99909 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.13■□□□□ 0.49
SSX3Q99909 EI24-213ENST00000618552 1747 ntTSL 5 BASIC18.13■□□□□ 0.49
SSX3Q99909 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSX3Q99909 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SSX3Q99909 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SSX3Q99909 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC18.13■□□□□ 0.49
SSX3Q99909 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SSX3Q99909 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SSX3Q99909 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SSX3Q99909 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSX3Q99909 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSX3Q99909 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSX3Q99909 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSX3Q99909 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SSX3Q99909 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX3Q99909 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX3Q99909 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX3Q99909 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC18.12■□□□□ 0.49
SSX3Q99909 PTCHD3P2-201ENST00000424937 1205 ntBASIC18.12■□□□□ 0.49
SSX3Q99909 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC18.12■□□□□ 0.49
SSX3Q99909 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX3Q99909 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.12■□□□□ 0.49
SSX3Q99909 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX3Q99909 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX3Q99909 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SSX3Q99909 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSX3Q99909 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX3Q99909 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSX3Q99909 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSX3Q99909 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX3Q99909 SERBP1P1-201ENST00000396021 1160 ntBASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms