Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
VPS35Q96QK1 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VPS35Q96QK1 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS35Q96QK1 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS35Q96QK1 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS35Q96QK1 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.64■■□□□ 1.06
VPS35Q96QK1 C9orf163-202ENST00000624034 2573 ntBASIC21.64■■□□□ 1.06
VPS35Q96QK1 AC087742.1-201ENST00000575880 1738 ntBASIC21.64■■□□□ 1.06
VPS35Q96QK1 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
VPS35Q96QK1 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS35Q96QK1 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.64■■□□□ 1.05
VPS35Q96QK1 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS35Q96QK1 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.64■■□□□ 1.05
VPS35Q96QK1 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.64■■□□□ 1.05
VPS35Q96QK1 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VPS35Q96QK1 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS35Q96QK1 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.64■■□□□ 1.05
VPS35Q96QK1 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS35Q96QK1 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.63■■□□□ 1.05
VPS35Q96QK1 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS35Q96QK1 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.63■■□□□ 1.05
VPS35Q96QK1 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.63■■□□□ 1.05
VPS35Q96QK1 ESRRAP2-201ENST00000418437 1549 ntBASIC21.63■■□□□ 1.05
VPS35Q96QK1 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS35Q96QK1 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
VPS35Q96QK1 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
VPS35Q96QK1 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS35Q96QK1 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS35Q96QK1 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS35Q96QK1 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS35Q96QK1 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS35Q96QK1 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
VPS35Q96QK1 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS35Q96QK1 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS35Q96QK1 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.62■■□□□ 1.05
VPS35Q96QK1 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.62■■□□□ 1.05
VPS35Q96QK1 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.62■■□□□ 1.05
VPS35Q96QK1 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.62■■□□□ 1.05
VPS35Q96QK1 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
VPS35Q96QK1 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS35Q96QK1 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS35Q96QK1 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS35Q96QK1 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS35Q96QK1 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS35Q96QK1 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS35Q96QK1 OXCT2P1-201ENST00000447263 1535 ntBASIC21.61■■□□□ 1.05
VPS35Q96QK1 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS35Q96QK1 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS35Q96QK1 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS35Q96QK1 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.6■■□□□ 1.05
VPS35Q96QK1 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
VPS35Q96QK1 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS35Q96QK1 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VPS35Q96QK1 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS35Q96QK1 MIR572-201ENST00000384983 95 ntBASIC21.6■■□□□ 1.05
VPS35Q96QK1 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.6■■□□□ 1.05
VPS35Q96QK1 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS35Q96QK1 ZNRF2P3-201ENST00000424200 374 ntBASIC21.6■■□□□ 1.05
VPS35Q96QK1 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.6■■□□□ 1.05
VPS35Q96QK1 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.6■■□□□ 1.05
VPS35Q96QK1 C1orf229-201ENST00000623686 2258 ntBASIC21.6■■□□□ 1.05
VPS35Q96QK1 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
VPS35Q96QK1 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VPS35Q96QK1 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.59■■□□□ 1.05
VPS35Q96QK1 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.59■■□□□ 1.05
VPS35Q96QK1 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS35Q96QK1 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS35Q96QK1 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS35Q96QK1 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS35Q96QK1 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS35Q96QK1 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.59■■□□□ 1.05
VPS35Q96QK1 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS35Q96QK1 IRS3P-201ENST00000223076 1006 ntBASIC21.59■■□□□ 1.05
VPS35Q96QK1 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VPS35Q96QK1 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS35Q96QK1 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.59■■□□□ 1.05
VPS35Q96QK1 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.59■■□□□ 1.05
VPS35Q96QK1 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
VPS35Q96QK1 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS35Q96QK1 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.59■■□□□ 1.05
VPS35Q96QK1 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS35Q96QK1 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS35Q96QK1 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
VPS35Q96QK1 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS35Q96QK1 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS35Q96QK1 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
VPS35Q96QK1 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.58■■□□□ 1.05
VPS35Q96QK1 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.58■■□□□ 1.05
VPS35Q96QK1 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.58■■□□□ 1.05
VPS35Q96QK1 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
VPS35Q96QK1 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.58■■□□□ 1.05
VPS35Q96QK1 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS35Q96QK1 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
VPS35Q96QK1 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
VPS35Q96QK1 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
VPS35Q96QK1 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS35Q96QK1 AC012676.1-201ENST00000574705 1949 ntBASIC21.57■■□□□ 1.04
VPS35Q96QK1 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.57■■□□□ 1.04
VPS35Q96QK1 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.57■■□□□ 1.04
VPS35Q96QK1 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms