Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LINC00477Q96M19 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
LINC00477Q96M19 C17orf82-201ENST00000623772 1530 ntBASIC16.33■□□□□ 0.2
LINC00477Q96M19 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
LINC00477Q96M19 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC16.33■□□□□ 0.2
LINC00477Q96M19 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LINC00477Q96M19 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LINC00477Q96M19 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC16.33■□□□□ 0.2
LINC00477Q96M19 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LINC00477Q96M19 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LINC00477Q96M19 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LINC00477Q96M19 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LINC00477Q96M19 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LINC00477Q96M19 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LINC00477Q96M19 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
LINC00477Q96M19 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LINC00477Q96M19 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LINC00477Q96M19 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LINC00477Q96M19 CA15P2-201ENST00000611168 834 ntBASIC16.32■□□□□ 0.2
LINC00477Q96M19 VGF-203ENST00000611537 1622 ntTSL 5 BASIC16.32■□□□□ 0.2
LINC00477Q96M19 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
LINC00477Q96M19 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LINC00477Q96M19 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LINC00477Q96M19 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LINC00477Q96M19 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC16.31■□□□□ 0.2
LINC00477Q96M19 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LINC00477Q96M19 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LINC00477Q96M19 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC16.31■□□□□ 0.2
LINC00477Q96M19 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC16.31■□□□□ 0.2
LINC00477Q96M19 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
LINC00477Q96M19 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC16.31■□□□□ 0.2
LINC00477Q96M19 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LINC00477Q96M19 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LINC00477Q96M19 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LINC00477Q96M19 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LINC00477Q96M19 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LINC00477Q96M19 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LINC00477Q96M19 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LINC00477Q96M19 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
LINC00477Q96M19 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LINC00477Q96M19 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LINC00477Q96M19 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
LINC00477Q96M19 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC16.3■□□□□ 0.2
LINC00477Q96M19 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LINC00477Q96M19 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LINC00477Q96M19 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LINC00477Q96M19 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LINC00477Q96M19 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LINC00477Q96M19 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LINC00477Q96M19 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
LINC00477Q96M19 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LINC00477Q96M19 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LINC00477Q96M19 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LINC00477Q96M19 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LINC00477Q96M19 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
LINC00477Q96M19 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LINC00477Q96M19 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LINC00477Q96M19 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LINC00477Q96M19 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LINC00477Q96M19 TSPY9P-201ENST00000440215 945 ntBASIC16.29■□□□□ 0.2
LINC00477Q96M19 TSPY11P-201ENST00000442607 1045 ntBASIC16.29■□□□□ 0.2
LINC00477Q96M19 AL499627.2-201ENST00000606283 725 ntBASIC16.29■□□□□ 0.2
LINC00477Q96M19 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LINC00477Q96M19 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LINC00477Q96M19 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LINC00477Q96M19 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC16.29■□□□□ 0.2
LINC00477Q96M19 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LINC00477Q96M19 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LINC00477Q96M19 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
LINC00477Q96M19 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LINC00477Q96M19 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LINC00477Q96M19 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LINC00477Q96M19 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC16.28■□□□□ 0.2
LINC00477Q96M19 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LINC00477Q96M19 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LINC00477Q96M19 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LINC00477Q96M19 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LINC00477Q96M19 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LINC00477Q96M19 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC16.28■□□□□ 0.2
LINC00477Q96M19 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LINC00477Q96M19 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LINC00477Q96M19 AC241377.3-202ENST00000626088 1088 ntBASIC16.28■□□□□ 0.2
LINC00477Q96M19 AC241585.3-202ENST00000628937 1088 ntBASIC16.28■□□□□ 0.2
LINC00477Q96M19 AC245100.8-202ENST00000629247 1058 ntBASIC16.28■□□□□ 0.2
LINC00477Q96M19 FBXW4P1-201ENST00000426721 2239 ntBASIC16.28■□□□□ 0.2
LINC00477Q96M19 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LINC00477Q96M19 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC16.28■□□□□ 0.2
LINC00477Q96M19 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC16.28■□□□□ 0.2
LINC00477Q96M19 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC16.28■□□□□ 0.2
LINC00477Q96M19 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
LINC00477Q96M19 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LINC00477Q96M19 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LINC00477Q96M19 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LINC00477Q96M19 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
LINC00477Q96M19 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
LINC00477Q96M19 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC16.27■□□□□ 0.2
LINC00477Q96M19 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC16.27■□□□□ 0.2
LINC00477Q96M19 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC16.27■□□□□ 0.2
LINC00477Q96M19 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LINC00477Q96M19 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms