Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC30.73■■■□□ 2.51
USP47Q96K76 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
USP47Q96K76 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC30.72■■■□□ 2.51
USP47Q96K76 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
USP47Q96K76 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC30.72■■■□□ 2.51
USP47Q96K76 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
USP47Q96K76 AC092666.2-201ENST00000613287 246 ntBASIC30.72■■■□□ 2.51
USP47Q96K76 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
USP47Q96K76 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
USP47Q96K76 AC137767.1-201ENST00000602918 1920 ntBASIC30.71■■■□□ 2.51
USP47Q96K76 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP47Q96K76 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC30.71■■■□□ 2.51
USP47Q96K76 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
USP47Q96K76 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP47Q96K76 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP47Q96K76 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC30.71■■■□□ 2.51
USP47Q96K76 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
USP47Q96K76 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC30.71■■■□□ 2.51
USP47Q96K76 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC30.71■■■□□ 2.51
USP47Q96K76 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
USP47Q96K76 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP47Q96K76 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC30.7■■■□□ 2.51
USP47Q96K76 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC30.7■■■□□ 2.51
USP47Q96K76 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
USP47Q96K76 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC30.7■■■□□ 2.5
USP47Q96K76 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.5
USP47Q96K76 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC30.7■■■□□ 2.5
USP47Q96K76 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC30.7■■■□□ 2.5
USP47Q96K76 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC30.69■■■□□ 2.5
USP47Q96K76 IRS3P-201ENST00000223076 1006 ntBASIC30.69■■■□□ 2.5
USP47Q96K76 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC30.69■■■□□ 2.5
USP47Q96K76 LGR4-203ENST00000480977 492 ntTSL 2 BASIC30.69■■■□□ 2.5
USP47Q96K76 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC30.69■■■□□ 2.5
USP47Q96K76 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC30.69■■■□□ 2.5
USP47Q96K76 OXCT2P1-201ENST00000447263 1535 ntBASIC30.69■■■□□ 2.5
USP47Q96K76 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
USP47Q96K76 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC30.69■■■□□ 2.5
USP47Q96K76 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
USP47Q96K76 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC30.69■■■□□ 2.5
USP47Q96K76 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
USP47Q96K76 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
USP47Q96K76 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC30.69■■■□□ 2.5
USP47Q96K76 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
USP47Q96K76 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
USP47Q96K76 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC30.68■■■□□ 2.5
USP47Q96K76 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
USP47Q96K76 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
USP47Q96K76 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
USP47Q96K76 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
USP47Q96K76 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
USP47Q96K76 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
USP47Q96K76 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
USP47Q96K76 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC30.67■■■□□ 2.5
USP47Q96K76 AC012414.1-201ENST00000556676 535 ntBASIC30.67■■■□□ 2.5
USP47Q96K76 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC30.67■■■□□ 2.5
USP47Q96K76 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
USP47Q96K76 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC30.67■■■□□ 2.5
USP47Q96K76 AC127496.7-201ENST00000625110 1798 ntBASIC30.67■■■□□ 2.5
USP47Q96K76 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC30.67■■■□□ 2.5
USP47Q96K76 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
USP47Q96K76 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
USP47Q96K76 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
USP47Q96K76 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
USP47Q96K76 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
USP47Q96K76 LHPP-203ENST00000392757 840 ntTSL 3 BASIC30.66■■■□□ 2.5
USP47Q96K76 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC30.66■■■□□ 2.5
USP47Q96K76 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
USP47Q96K76 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
USP47Q96K76 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC30.66■■■□□ 2.5
USP47Q96K76 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC30.66■■■□□ 2.5
USP47Q96K76 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC30.66■■■□□ 2.5
USP47Q96K76 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
USP47Q96K76 AC026271.2-201ENST00000428091 497 ntBASIC30.66■■■□□ 2.5
USP47Q96K76 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
USP47Q96K76 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC30.65■■■□□ 2.5
USP47Q96K76 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
USP47Q96K76 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
USP47Q96K76 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
USP47Q96K76 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
USP47Q96K76 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
USP47Q96K76 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
USP47Q96K76 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
USP47Q96K76 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC30.65■■■□□ 2.5
USP47Q96K76 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC30.65■■■□□ 2.5
USP47Q96K76 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
USP47Q96K76 SMUG1P1-201ENST00000590640 811 ntBASIC30.65■■■□□ 2.5
USP47Q96K76 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC30.65■■■□□ 2.5
USP47Q96K76 ESRRAP2-201ENST00000418437 1549 ntBASIC30.65■■■□□ 2.5
USP47Q96K76 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
USP47Q96K76 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
USP47Q96K76 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
USP47Q96K76 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC30.64■■■□□ 2.5
USP47Q96K76 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC30.64■■■□□ 2.5
USP47Q96K76 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC30.64■■■□□ 2.5
USP47Q96K76 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC30.64■■■□□ 2.5
USP47Q96K76 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC30.64■■■□□ 2.5
USP47Q96K76 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
USP47Q96K76 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC30.64■■■□□ 2.49
USP47Q96K76 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP47Q96K76 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC30.63■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms