Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP3Q96DZ5 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CLIP3Q96DZ5 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP3Q96DZ5 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP3Q96DZ5 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP3Q96DZ5 YBX1P1-201ENST00000445822 960 ntBASIC20.93■□□□□ 0.94
CLIP3Q96DZ5 AL162430.1-201ENST00000480705 870 ntBASIC20.93■□□□□ 0.94
CLIP3Q96DZ5 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.93■□□□□ 0.94
CLIP3Q96DZ5 MIR6084-201ENST00000622012 110 ntBASIC20.93■□□□□ 0.94
CLIP3Q96DZ5 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CLIP3Q96DZ5 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP3Q96DZ5 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.93■□□□□ 0.94
CLIP3Q96DZ5 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP3Q96DZ5 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.92■□□□□ 0.94
CLIP3Q96DZ5 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLIP3Q96DZ5 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CLIP3Q96DZ5 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.92■□□□□ 0.94
CLIP3Q96DZ5 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.92■□□□□ 0.94
CLIP3Q96DZ5 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
CLIP3Q96DZ5 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CLIP3Q96DZ5 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CLIP3Q96DZ5 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLIP3Q96DZ5 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLIP3Q96DZ5 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.92■□□□□ 0.94
CLIP3Q96DZ5 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLIP3Q96DZ5 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.92■□□□□ 0.94
CLIP3Q96DZ5 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLIP3Q96DZ5 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLIP3Q96DZ5 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLIP3Q96DZ5 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLIP3Q96DZ5 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLIP3Q96DZ5 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.91■□□□□ 0.94
CLIP3Q96DZ5 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.91■□□□□ 0.94
CLIP3Q96DZ5 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CLIP3Q96DZ5 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.91■□□□□ 0.94
CLIP3Q96DZ5 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.91■□□□□ 0.94
CLIP3Q96DZ5 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CLIP3Q96DZ5 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.91■□□□□ 0.94
CLIP3Q96DZ5 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CLIP3Q96DZ5 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLIP3Q96DZ5 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 AC027612.3-201ENST00000413684 1047 ntBASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 AC034268.1-201ENST00000441047 882 ntBASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLIP3Q96DZ5 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.94
CLIP3Q96DZ5 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLIP3Q96DZ5 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLIP3Q96DZ5 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CLIP3Q96DZ5 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.89■□□□□ 0.93
CLIP3Q96DZ5 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLIP3Q96DZ5 AC012676.1-201ENST00000574705 1949 ntBASIC20.89■□□□□ 0.93
CLIP3Q96DZ5 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CLIP3Q96DZ5 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CLIP3Q96DZ5 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.89■□□□□ 0.93
CLIP3Q96DZ5 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CLIP3Q96DZ5 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLIP3Q96DZ5 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
CLIP3Q96DZ5 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLIP3Q96DZ5 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLIP3Q96DZ5 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 AC105233.4-201ENST00000642045 216 ntBASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLIP3Q96DZ5 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CLIP3Q96DZ5 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIP3Q96DZ5 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms