Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC29.04■■■□□ 2.24
USHBP1Q8N6Y0 BID-214ENST00000617586 542 ntTSL 5 BASIC29.04■■■□□ 2.24
USHBP1Q8N6Y0 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
USHBP1Q8N6Y0 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC29.04■■■□□ 2.24
USHBP1Q8N6Y0 DUSP8P3-201ENST00000399571 1760 ntBASIC29.03■■■□□ 2.24
USHBP1Q8N6Y0 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC29.03■■■□□ 2.24
USHBP1Q8N6Y0 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
USHBP1Q8N6Y0 CROCCP5-201ENST00000436658 830 ntBASIC29.03■■■□□ 2.24
USHBP1Q8N6Y0 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
USHBP1Q8N6Y0 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC29.03■■■□□ 2.24
USHBP1Q8N6Y0 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
USHBP1Q8N6Y0 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC29.02■■■□□ 2.24
USHBP1Q8N6Y0 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
USHBP1Q8N6Y0 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
USHBP1Q8N6Y0 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
USHBP1Q8N6Y0 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
USHBP1Q8N6Y0 MAP2K4P1-201ENST00000438453 1195 ntBASIC29.02■■■□□ 2.24
USHBP1Q8N6Y0 AC026185.1-201ENST00000445748 174 ntBASIC29.02■■■□□ 2.24
USHBP1Q8N6Y0 PPP1R14BP3-201ENST00000509033 445 ntBASIC29.02■■■□□ 2.24
USHBP1Q8N6Y0 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC29.02■■■□□ 2.24
USHBP1Q8N6Y0 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC29.02■■■□□ 2.24
USHBP1Q8N6Y0 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC29.02■■■□□ 2.24
USHBP1Q8N6Y0 AC011767.1-201ENST00000617410 1153 ntBASIC29.02■■■□□ 2.24
USHBP1Q8N6Y0 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC29.02■■■□□ 2.24
USHBP1Q8N6Y0 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.24
USHBP1Q8N6Y0 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC29.01■■■□□ 2.23
USHBP1Q8N6Y0 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC29.01■■■□□ 2.23
USHBP1Q8N6Y0 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC29.01■■■□□ 2.23
USHBP1Q8N6Y0 TESC-206ENST00000541210 936 ntTSL 3 BASIC29.01■■■□□ 2.23
USHBP1Q8N6Y0 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
USHBP1Q8N6Y0 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC29.01■■■□□ 2.23
USHBP1Q8N6Y0 GAS2L1P2-201ENST00000436355 1356 ntBASIC29.01■■■□□ 2.23
USHBP1Q8N6Y0 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC29■■■□□ 2.23
USHBP1Q8N6Y0 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC29■■■□□ 2.23
USHBP1Q8N6Y0 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC29■■■□□ 2.23
USHBP1Q8N6Y0 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC29■■■□□ 2.23
USHBP1Q8N6Y0 KRT19P1-201ENST00000405746 1186 ntBASIC29■■■□□ 2.23
USHBP1Q8N6Y0 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC29■■■□□ 2.23
USHBP1Q8N6Y0 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC29■■■□□ 2.23
USHBP1Q8N6Y0 AC079140.4-201ENST00000507448 529 ntBASIC29■■■□□ 2.23
USHBP1Q8N6Y0 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC29■■■□□ 2.23
USHBP1Q8N6Y0 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC29■■■□□ 2.23
USHBP1Q8N6Y0 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
USHBP1Q8N6Y0 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC29■■■□□ 2.23
USHBP1Q8N6Y0 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
USHBP1Q8N6Y0 ESRRAP2-201ENST00000418437 1549 ntBASIC28.99■■■□□ 2.23
USHBP1Q8N6Y0 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
USHBP1Q8N6Y0 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC28.99■■■□□ 2.23
USHBP1Q8N6Y0 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC28.99■■■□□ 2.23
USHBP1Q8N6Y0 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
USHBP1Q8N6Y0 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC28.99■■■□□ 2.23
USHBP1Q8N6Y0 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC28.99■■■□□ 2.23
USHBP1Q8N6Y0 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC28.99■■■□□ 2.23
USHBP1Q8N6Y0 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC28.99■■■□□ 2.23
USHBP1Q8N6Y0 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC28.98■■■□□ 2.23
USHBP1Q8N6Y0 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
USHBP1Q8N6Y0 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
USHBP1Q8N6Y0 SPI1-203ENST00000533030 661 ntTSL 2 BASIC28.98■■■□□ 2.23
USHBP1Q8N6Y0 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC28.98■■■□□ 2.23
USHBP1Q8N6Y0 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
USHBP1Q8N6Y0 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC28.98■■■□□ 2.23
USHBP1Q8N6Y0 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
USHBP1Q8N6Y0 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
USHBP1Q8N6Y0 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC28.97■■■□□ 2.23
USHBP1Q8N6Y0 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC28.97■■■□□ 2.23
USHBP1Q8N6Y0 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC28.97■■■□□ 2.23
USHBP1Q8N6Y0 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC28.97■■■□□ 2.23
USHBP1Q8N6Y0 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC28.97■■■□□ 2.23
USHBP1Q8N6Y0 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
USHBP1Q8N6Y0 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC28.97■■■□□ 2.23
USHBP1Q8N6Y0 AC104771.1-201ENST00000603335 964 ntBASIC28.97■■■□□ 2.23
USHBP1Q8N6Y0 PXK-203ENST00000383715 1756 ntTSL 5 BASIC28.97■■■□□ 2.23
USHBP1Q8N6Y0 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
USHBP1Q8N6Y0 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC28.97■■■□□ 2.23
USHBP1Q8N6Y0 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC28.96■■■□□ 2.23
USHBP1Q8N6Y0 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
USHBP1Q8N6Y0 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
USHBP1Q8N6Y0 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
USHBP1Q8N6Y0 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
USHBP1Q8N6Y0 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
USHBP1Q8N6Y0 CPT2-209ENST00000636935 803 ntTSL 5 BASIC28.96■■■□□ 2.23
USHBP1Q8N6Y0 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
USHBP1Q8N6Y0 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC28.95■■■□□ 2.23
USHBP1Q8N6Y0 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC28.95■■■□□ 2.23
USHBP1Q8N6Y0 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC28.95■■■□□ 2.23
USHBP1Q8N6Y0 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC28.95■■■□□ 2.23
USHBP1Q8N6Y0 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC28.95■■■□□ 2.23
USHBP1Q8N6Y0 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC28.95■■■□□ 2.22
USHBP1Q8N6Y0 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC28.95■■■□□ 2.22
USHBP1Q8N6Y0 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
USHBP1Q8N6Y0 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC28.95■■■□□ 2.22
USHBP1Q8N6Y0 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
USHBP1Q8N6Y0 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC28.94■■■□□ 2.22
USHBP1Q8N6Y0 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
USHBP1Q8N6Y0 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
USHBP1Q8N6Y0 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC28.94■■■□□ 2.22
USHBP1Q8N6Y0 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC28.94■■■□□ 2.22
USHBP1Q8N6Y0 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC28.94■■■□□ 2.22
USHBP1Q8N6Y0 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC28.94■■■□□ 2.22
USHBP1Q8N6Y0 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms