Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC28AQ8IWP9 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28AQ8IWP9 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CCDC28AQ8IWP9 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28AQ8IWP9 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28AQ8IWP9 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28AQ8IWP9 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28AQ8IWP9 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28AQ8IWP9 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28AQ8IWP9 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC18.17■□□□□ 0.5
CCDC28AQ8IWP9 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC28AQ8IWP9 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC28AQ8IWP9 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28AQ8IWP9 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28AQ8IWP9 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
CCDC28AQ8IWP9 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 AC008813.1-201ENST00000536597 885 ntBASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC28AQ8IWP9 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28AQ8IWP9 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
CCDC28AQ8IWP9 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.5
CCDC28AQ8IWP9 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CCDC28AQ8IWP9 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28AQ8IWP9 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28AQ8IWP9 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28AQ8IWP9 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28AQ8IWP9 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28AQ8IWP9 RNF166-209ENST00000567844 633 ntTSL 5 BASIC18.14■□□□□ 0.49
CCDC28AQ8IWP9 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28AQ8IWP9 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.14■□□□□ 0.49
CCDC28AQ8IWP9 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28AQ8IWP9 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28AQ8IWP9 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28AQ8IWP9 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
CCDC28AQ8IWP9 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC28AQ8IWP9 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CCDC28AQ8IWP9 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 AL359504.2-201ENST00000605506 1601 ntBASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 LINC01006-201ENST00000333319 2292 ntBASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28AQ8IWP9 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms