Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
VPS53Q5VIR6 EP400NL-214ENST00000641289 2402 ntBASIC26.34■■□□□ 1.81
VPS53Q5VIR6 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
VPS53Q5VIR6 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
VPS53Q5VIR6 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
VPS53Q5VIR6 MIR939-201ENST00000401314 82 ntBASIC26.33■■□□□ 1.81
VPS53Q5VIR6 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC26.33■■□□□ 1.81
VPS53Q5VIR6 AC008764.7-201ENST00000593779 1081 ntBASIC26.33■■□□□ 1.81
VPS53Q5VIR6 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
VPS53Q5VIR6 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
VPS53Q5VIR6 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
VPS53Q5VIR6 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
VPS53Q5VIR6 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
VPS53Q5VIR6 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
VPS53Q5VIR6 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
VPS53Q5VIR6 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
VPS53Q5VIR6 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
VPS53Q5VIR6 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
VPS53Q5VIR6 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
VPS53Q5VIR6 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
VPS53Q5VIR6 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC26.32■■□□□ 1.8
VPS53Q5VIR6 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
VPS53Q5VIR6 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC26.32■■□□□ 1.8
VPS53Q5VIR6 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
VPS53Q5VIR6 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
VPS53Q5VIR6 AC087742.1-201ENST00000575880 1738 ntBASIC26.31■■□□□ 1.8
VPS53Q5VIR6 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
VPS53Q5VIR6 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
VPS53Q5VIR6 BX842568.3-201ENST00000418104 571 ntBASIC26.31■■□□□ 1.8
VPS53Q5VIR6 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
VPS53Q5VIR6 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
VPS53Q5VIR6 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC26.31■■□□□ 1.8
VPS53Q5VIR6 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
VPS53Q5VIR6 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
VPS53Q5VIR6 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
VPS53Q5VIR6 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
VPS53Q5VIR6 ECEL1P1-201ENST00000373592 1742 ntBASIC26.31■■□□□ 1.8
VPS53Q5VIR6 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
VPS53Q5VIR6 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
VPS53Q5VIR6 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC26.3■■□□□ 1.8
VPS53Q5VIR6 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC26.3■■□□□ 1.8
VPS53Q5VIR6 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC26.3■■□□□ 1.8
VPS53Q5VIR6 AC233992.3-201ENST00000607491 485 ntBASIC26.3■■□□□ 1.8
VPS53Q5VIR6 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
VPS53Q5VIR6 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
VPS53Q5VIR6 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC26.3■■□□□ 1.8
VPS53Q5VIR6 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
VPS53Q5VIR6 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
VPS53Q5VIR6 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
VPS53Q5VIR6 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC26.29■■□□□ 1.8
VPS53Q5VIR6 AC127496.7-201ENST00000625110 1798 ntBASIC26.29■■□□□ 1.8
VPS53Q5VIR6 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC26.29■■□□□ 1.8
VPS53Q5VIR6 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
VPS53Q5VIR6 AC099791.1-201ENST00000416440 715 ntBASIC26.29■■□□□ 1.8
VPS53Q5VIR6 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC26.29■■□□□ 1.8
VPS53Q5VIR6 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
VPS53Q5VIR6 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
VPS53Q5VIR6 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
VPS53Q5VIR6 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
VPS53Q5VIR6 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
VPS53Q5VIR6 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
VPS53Q5VIR6 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
VPS53Q5VIR6 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
VPS53Q5VIR6 LINC01960-201ENST00000563759 1884 ntBASIC26.28■■□□□ 1.8
VPS53Q5VIR6 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
VPS53Q5VIR6 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
VPS53Q5VIR6 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC26.28■■□□□ 1.8
VPS53Q5VIR6 AL031602.1-201ENST00000633169 911 ntBASIC26.28■■□□□ 1.8
VPS53Q5VIR6 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
VPS53Q5VIR6 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
VPS53Q5VIR6 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
VPS53Q5VIR6 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
VPS53Q5VIR6 EI24-211ENST00000534546 1544 ntTSL 2 BASIC26.28■■□□□ 1.8
VPS53Q5VIR6 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
VPS53Q5VIR6 LINC00526-201ENST00000581067 1875 ntBASIC26.28■■□□□ 1.8
VPS53Q5VIR6 LSR-203ENST00000360798 1963 ntTSL 2 BASIC26.27■■□□□ 1.8
VPS53Q5VIR6 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
VPS53Q5VIR6 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC26.27■■□□□ 1.8
VPS53Q5VIR6 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC26.27■■□□□ 1.8
VPS53Q5VIR6 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC26.27■■□□□ 1.8
VPS53Q5VIR6 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
VPS53Q5VIR6 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
VPS53Q5VIR6 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
VPS53Q5VIR6 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
VPS53Q5VIR6 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
VPS53Q5VIR6 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
VPS53Q5VIR6 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
VPS53Q5VIR6 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC26.26■■□□□ 1.79
VPS53Q5VIR6 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
VPS53Q5VIR6 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC26.26■■□□□ 1.79
VPS53Q5VIR6 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC26.26■■□□□ 1.79
VPS53Q5VIR6 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC26.26■■□□□ 1.79
VPS53Q5VIR6 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC26.26■■□□□ 1.79
VPS53Q5VIR6 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
VPS53Q5VIR6 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
VPS53Q5VIR6 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.79
VPS53Q5VIR6 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
VPS53Q5VIR6 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS53Q5VIR6 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
VPS53Q5VIR6 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms