Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC24.37■■□□□ 1.49
NKX3-2P78367 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
NKX3-2P78367 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
NKX3-2P78367 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
NKX3-2P78367 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
NKX3-2P78367 DUSP8P3-201ENST00000399571 1760 ntBASIC24.37■■□□□ 1.49
NKX3-2P78367 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
NKX3-2P78367 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
NKX3-2P78367 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
NKX3-2P78367 H19-210ENST00000439725 1929 ntTSL 2 BASIC24.36■■□□□ 1.49
NKX3-2P78367 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC24.36■■□□□ 1.49
NKX3-2P78367 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
NKX3-2P78367 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC24.36■■□□□ 1.49
NKX3-2P78367 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
NKX3-2P78367 KRT87P-202ENST00000534226 1464 ntBASIC24.36■■□□□ 1.49
NKX3-2P78367 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
NKX3-2P78367 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
NKX3-2P78367 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC24.35■■□□□ 1.49
NKX3-2P78367 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NKX3-2P78367 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
NKX3-2P78367 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC24.35■■□□□ 1.49
NKX3-2P78367 AL050303.2-201ENST00000619798 666 ntBASIC24.35■■□□□ 1.49
NKX3-2P78367 GAMT-205ENST00000640762 751 ntTSL 5 BASIC24.35■■□□□ 1.49
NKX3-2P78367 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NKX3-2P78367 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC24.35■■□□□ 1.49
NKX3-2P78367 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NKX3-2P78367 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
NKX3-2P78367 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
NKX3-2P78367 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
NKX3-2P78367 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
NKX3-2P78367 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC24.34■■□□□ 1.49
NKX3-2P78367 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC24.34■■□□□ 1.49
NKX3-2P78367 DUX4L16-201ENST00000555130 1264 ntBASIC24.34■■□□□ 1.49
NKX3-2P78367 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC24.34■■□□□ 1.49
NKX3-2P78367 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC24.34■■□□□ 1.49
NKX3-2P78367 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
NKX3-2P78367 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NKX3-2P78367 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
NKX3-2P78367 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
NKX3-2P78367 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
NKX3-2P78367 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
NKX3-2P78367 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC24.33■■□□□ 1.49
NKX3-2P78367 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC24.33■■□□□ 1.49
NKX3-2P78367 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
NKX3-2P78367 AC104187.1-201ENST00000607510 612 ntBASIC24.33■■□□□ 1.49
NKX3-2P78367 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC24.33■■□□□ 1.49
NKX3-2P78367 AC231657.2-201ENST00000624556 255 ntBASIC24.33■■□□□ 1.49
NKX3-2P78367 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
NKX3-2P78367 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
NKX3-2P78367 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
NKX3-2P78367 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC24.33■■□□□ 1.48
NKX3-2P78367 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
NKX3-2P78367 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC24.32■■□□□ 1.48
NKX3-2P78367 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
NKX3-2P78367 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
NKX3-2P78367 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
NKX3-2P78367 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
NKX3-2P78367 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC24.31■■□□□ 1.48
NKX3-2P78367 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
NKX3-2P78367 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC24.31■■□□□ 1.48
NKX3-2P78367 AL121832.2-201ENST00000610979 668 ntBASIC24.31■■□□□ 1.48
NKX3-2P78367 WT1-AS_3.1-201ENST00000613262 234 ntBASIC24.31■■□□□ 1.48
NKX3-2P78367 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
NKX3-2P78367 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
NKX3-2P78367 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
NKX3-2P78367 AC020928.2-201ENST00000588717 2197 ntBASIC24.3■■□□□ 1.48
NKX3-2P78367 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
NKX3-2P78367 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC24.3■■□□□ 1.48
NKX3-2P78367 LINC01124-201ENST00000409786 2117 ntBASIC24.3■■□□□ 1.48
NKX3-2P78367 GUSBP6-202ENST00000438529 1198 ntBASIC24.3■■□□□ 1.48
NKX3-2P78367 SLC7A5P2-201ENST00000553010 536 ntBASIC24.3■■□□□ 1.48
NKX3-2P78367 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
NKX3-2P78367 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC24.3■■□□□ 1.48
NKX3-2P78367 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
NKX3-2P78367 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC24.29■■□□□ 1.48
NKX3-2P78367 TSPY6P-201ENST00000448518 926 ntBASIC24.29■■□□□ 1.48
NKX3-2P78367 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
NKX3-2P78367 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC24.29■■□□□ 1.48
NKX3-2P78367 PARP1-210ENST00000629232 477 ntTSL 5 BASIC24.29■■□□□ 1.48
NKX3-2P78367 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
NKX3-2P78367 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NKX3-2P78367 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
NKX3-2P78367 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
NKX3-2P78367 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NKX3-2P78367 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
NKX3-2P78367 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NKX3-2P78367 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC24.28■■□□□ 1.48
NKX3-2P78367 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC24.28■■□□□ 1.48
NKX3-2P78367 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC24.28■■□□□ 1.48
NKX3-2P78367 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC24.28■■□□□ 1.48
NKX3-2P78367 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC24.28■■□□□ 1.48
NKX3-2P78367 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC24.28■■□□□ 1.48
NKX3-2P78367 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC24.28■■□□□ 1.48
NKX3-2P78367 MAZ-216ENST00000616501 991 ntTSL 5 BASIC24.28■■□□□ 1.48
NKX3-2P78367 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
NKX3-2P78367 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NKX3-2P78367 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
NKX3-2P78367 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
NKX3-2P78367 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
NKX3-2P78367 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms