Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PKNOX1P55347 LINC01960-201ENST00000563759 1884 ntBASIC21.36■■□□□ 1.01
PKNOX1P55347 FBXW4P1-201ENST00000426721 2239 ntBASIC21.36■■□□□ 1.01
PKNOX1P55347 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.36■■□□□ 1.01
PKNOX1P55347 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PKNOX1P55347 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PKNOX1P55347 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
PKNOX1P55347 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.35■■□□□ 1.01
PKNOX1P55347 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
PKNOX1P55347 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
PKNOX1P55347 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
PKNOX1P55347 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PKNOX1P55347 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
PKNOX1P55347 C17orf82-201ENST00000623772 1530 ntBASIC21.34■■□□□ 1.01
PKNOX1P55347 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
PKNOX1P55347 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
PKNOX1P55347 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PKNOX1P55347 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
PKNOX1P55347 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.34■■□□□ 1.01
PKNOX1P55347 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.34■■□□□ 1.01
PKNOX1P55347 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PKNOX1P55347 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PKNOX1P55347 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
PKNOX1P55347 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
PKNOX1P55347 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
PKNOX1P55347 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.33■■□□□ 1.01
PKNOX1P55347 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
PKNOX1P55347 AC009299.2-201ENST00000482477 511 ntBASIC21.33■■□□□ 1.01
PKNOX1P55347 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PKNOX1P55347 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
PKNOX1P55347 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
PKNOX1P55347 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.33■■□□□ 1
PKNOX1P55347 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.32■■□□□ 1
PKNOX1P55347 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.32■■□□□ 1
PKNOX1P55347 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.32■■□□□ 1
PKNOX1P55347 TSPY9P-201ENST00000440215 945 ntBASIC21.32■■□□□ 1
PKNOX1P55347 TSPY11P-201ENST00000442607 1045 ntBASIC21.32■■□□□ 1
PKNOX1P55347 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.32■■□□□ 1
PKNOX1P55347 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
PKNOX1P55347 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.32■■□□□ 1
PKNOX1P55347 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PKNOX1P55347 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
PKNOX1P55347 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PKNOX1P55347 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.32■■□□□ 1
PKNOX1P55347 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.32■■□□□ 1
PKNOX1P55347 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.32■■□□□ 1
PKNOX1P55347 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.32■■□□□ 1
PKNOX1P55347 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
PKNOX1P55347 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.32■■□□□ 1
PKNOX1P55347 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
PKNOX1P55347 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.31■■□□□ 1
PKNOX1P55347 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PKNOX1P55347 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.31■■□□□ 1
PKNOX1P55347 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
PKNOX1P55347 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.31■■□□□ 1
PKNOX1P55347 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.31■■□□□ 1
PKNOX1P55347 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.31■■□□□ 1
PKNOX1P55347 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.31■■□□□ 1
PKNOX1P55347 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PKNOX1P55347 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
PKNOX1P55347 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.31■■□□□ 1
PKNOX1P55347 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.31■■□□□ 1
PKNOX1P55347 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PKNOX1P55347 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
PKNOX1P55347 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.3■■□□□ 1
PKNOX1P55347 AC004687.1-201ENST00000579003 1625 ntBASIC21.3■■□□□ 1
PKNOX1P55347 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PKNOX1P55347 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.3■■□□□ 1
PKNOX1P55347 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PKNOX1P55347 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
PKNOX1P55347 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.3■■□□□ 1
PKNOX1P55347 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PKNOX1P55347 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PKNOX1P55347 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.3■■□□□ 1
PKNOX1P55347 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.29■■□□□ 1
PKNOX1P55347 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.29■■□□□ 1
PKNOX1P55347 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
PKNOX1P55347 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PKNOX1P55347 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PKNOX1P55347 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.29■■□□□ 1
PKNOX1P55347 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.29■■□□□ 1
PKNOX1P55347 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.29■■□□□ 1
PKNOX1P55347 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
PKNOX1P55347 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.28■■□□□ 1
PKNOX1P55347 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PKNOX1P55347 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PKNOX1P55347 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PKNOX1P55347 AL451085.2-201ENST00000605085 799 ntBASIC21.28■■□□□ 1
PKNOX1P55347 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.28■■□□□ 1
PKNOX1P55347 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
PKNOX1P55347 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.28■■□□□ 1
PKNOX1P55347 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PKNOX1P55347 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
PKNOX1P55347 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
PKNOX1P55347 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.28■■□□□ 1
PKNOX1P55347 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PKNOX1P55347 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
PKNOX1P55347 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.28■■□□□ 1
PKNOX1P55347 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.28■■□□□ 1
PKNOX1P55347 SLC25A24-204ENST00000569674 2357 ntBASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms