Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC25.45■■□□□ 1.66
HMGCS2P54868 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC25.45■■□□□ 1.66
HMGCS2P54868 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC25.45■■□□□ 1.66
HMGCS2P54868 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
HMGCS2P54868 ESRRAP2-201ENST00000418437 1549 ntBASIC25.44■■□□□ 1.66
HMGCS2P54868 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC25.44■■□□□ 1.66
HMGCS2P54868 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC25.44■■□□□ 1.66
HMGCS2P54868 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC25.44■■□□□ 1.66
HMGCS2P54868 AC006970.2-201ENST00000450065 779 ntBASIC25.44■■□□□ 1.66
HMGCS2P54868 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC25.44■■□□□ 1.66
HMGCS2P54868 SPI1-203ENST00000533030 661 ntTSL 2 BASIC25.44■■□□□ 1.66
HMGCS2P54868 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC25.44■■□□□ 1.66
HMGCS2P54868 AC011767.1-201ENST00000617410 1153 ntBASIC25.44■■□□□ 1.66
HMGCS2P54868 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
HMGCS2P54868 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
HMGCS2P54868 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
HMGCS2P54868 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
HMGCS2P54868 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC25.44■■□□□ 1.66
HMGCS2P54868 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC25.43■■□□□ 1.66
HMGCS2P54868 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
HMGCS2P54868 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
HMGCS2P54868 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
HMGCS2P54868 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
HMGCS2P54868 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
HMGCS2P54868 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC25.43■■□□□ 1.66
HMGCS2P54868 EMC9-206ENST00000560403 872 ntTSL 2 BASIC25.43■■□□□ 1.66
HMGCS2P54868 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
HMGCS2P54868 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC25.43■■□□□ 1.66
HMGCS2P54868 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
HMGCS2P54868 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC25.42■■□□□ 1.66
HMGCS2P54868 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC25.42■■□□□ 1.66
HMGCS2P54868 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
HMGCS2P54868 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC25.42■■□□□ 1.66
HMGCS2P54868 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC25.42■■□□□ 1.66
HMGCS2P54868 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC25.42■■□□□ 1.66
HMGCS2P54868 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC25.41■■□□□ 1.66
HMGCS2P54868 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC25.41■■□□□ 1.66
HMGCS2P54868 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
HMGCS2P54868 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC25.41■■□□□ 1.66
HMGCS2P54868 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
HMGCS2P54868 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC25.41■■□□□ 1.66
HMGCS2P54868 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
HMGCS2P54868 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
HMGCS2P54868 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
HMGCS2P54868 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
HMGCS2P54868 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
HMGCS2P54868 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
HMGCS2P54868 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
HMGCS2P54868 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
HMGCS2P54868 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
HMGCS2P54868 KRT18P11-201ENST00000435214 1283 ntBASIC25.4■■□□□ 1.66
HMGCS2P54868 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
HMGCS2P54868 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC25.4■■□□□ 1.66
HMGCS2P54868 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC25.4■■□□□ 1.66
HMGCS2P54868 DUSP8P3-201ENST00000399571 1760 ntBASIC25.4■■□□□ 1.66
HMGCS2P54868 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
HMGCS2P54868 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC25.4■■□□□ 1.66
HMGCS2P54868 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
HMGCS2P54868 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC25.39■■□□□ 1.66
HMGCS2P54868 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
HMGCS2P54868 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC25.39■■□□□ 1.66
HMGCS2P54868 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC25.39■■□□□ 1.66
HMGCS2P54868 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
HMGCS2P54868 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC25.39■■□□□ 1.66
HMGCS2P54868 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
HMGCS2P54868 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC25.39■■□□□ 1.66
HMGCS2P54868 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
HMGCS2P54868 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC25.39■■□□□ 1.66
HMGCS2P54868 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
HMGCS2P54868 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
HMGCS2P54868 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC25.39■■□□□ 1.65
HMGCS2P54868 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC25.38■■□□□ 1.65
HMGCS2P54868 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
HMGCS2P54868 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
HMGCS2P54868 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
HMGCS2P54868 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC25.38■■□□□ 1.65
HMGCS2P54868 METTL26-203ENST00000397664 604 ntTSL 2 BASIC25.38■■□□□ 1.65
HMGCS2P54868 AL109923.1-201ENST00000618799 583 ntBASIC25.38■■□□□ 1.65
HMGCS2P54868 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC25.38■■□□□ 1.65
HMGCS2P54868 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC25.37■■□□□ 1.65
HMGCS2P54868 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
HMGCS2P54868 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
HMGCS2P54868 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
HMGCS2P54868 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
HMGCS2P54868 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
HMGCS2P54868 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
HMGCS2P54868 MIR663A-201ENST00000385250 93 ntBASIC25.37■■□□□ 1.65
HMGCS2P54868 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
HMGCS2P54868 AL355802.2-201ENST00000402069 882 ntBASIC25.37■■□□□ 1.65
HMGCS2P54868 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC25.37■■□□□ 1.65
HMGCS2P54868 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
HMGCS2P54868 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
HMGCS2P54868 NCF1B-203ENST00000435988 1254 ntBASIC25.36■■□□□ 1.65
HMGCS2P54868 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC25.36■■□□□ 1.65
HMGCS2P54868 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
HMGCS2P54868 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC25.36■■□□□ 1.65
HMGCS2P54868 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
HMGCS2P54868 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
HMGCS2P54868 AC005224.4-201ENST00000583262 1652 ntBASIC25.36■■□□□ 1.65
HMGCS2P54868 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms