Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LIMK1P53667 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LIMK1P53667 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
LIMK1P53667 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.67■■□□□ 1.06
LIMK1P53667 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.67■■□□□ 1.06
LIMK1P53667 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.67■■□□□ 1.06
LIMK1P53667 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.67■■□□□ 1.06
LIMK1P53667 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMK1P53667 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.66■■□□□ 1.06
LIMK1P53667 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.66■■□□□ 1.06
LIMK1P53667 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LIMK1P53667 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
LIMK1P53667 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMK1P53667 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.66■■□□□ 1.06
LIMK1P53667 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMK1P53667 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.66■■□□□ 1.06
LIMK1P53667 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
LIMK1P53667 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMK1P53667 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.66■■□□□ 1.06
LIMK1P53667 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.66■■□□□ 1.06
LIMK1P53667 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.66■■□□□ 1.06
LIMK1P53667 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.66■■□□□ 1.06
LIMK1P53667 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.66■■□□□ 1.06
LIMK1P53667 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
LIMK1P53667 AC231657.2-201ENST00000624556 255 ntBASIC21.66■■□□□ 1.06
LIMK1P53667 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMK1P53667 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMK1P53667 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMK1P53667 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LIMK1P53667 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMK1P53667 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMK1P53667 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
LIMK1P53667 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMK1P53667 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.65■■□□□ 1.06
LIMK1P53667 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
LIMK1P53667 AC069152.1-201ENST00000438030 544 ntBASIC21.65■■□□□ 1.06
LIMK1P53667 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.65■■□□□ 1.06
LIMK1P53667 MFSD11-216ENST00000590393 1141 ntBASIC21.65■■□□□ 1.06
LIMK1P53667 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.65■■□□□ 1.06
LIMK1P53667 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMK1P53667 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
LIMK1P53667 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
LIMK1P53667 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LIMK1P53667 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LIMK1P53667 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LIMK1P53667 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LIMK1P53667 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LIMK1P53667 AC008687.6-201ENST00000596318 630 ntBASIC21.64■■□□□ 1.05
LIMK1P53667 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.64■■□□□ 1.05
LIMK1P53667 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.64■■□□□ 1.05
LIMK1P53667 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LIMK1P53667 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.64■■□□□ 1.05
LIMK1P53667 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.64■■□□□ 1.05
LIMK1P53667 SLC6A10P-202ENST00000431994 2058 ntBASIC21.64■■□□□ 1.05
LIMK1P53667 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.63■■□□□ 1.05
LIMK1P53667 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LIMK1P53667 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LIMK1P53667 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LIMK1P53667 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LIMK1P53667 SLC29A4P1-201ENST00000398760 971 ntBASIC21.63■■□□□ 1.05
LIMK1P53667 AC073210.2-201ENST00000430369 194 ntBASIC21.63■■□□□ 1.05
LIMK1P53667 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LIMK1P53667 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.63■■□□□ 1.05
LIMK1P53667 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.63■■□□□ 1.05
LIMK1P53667 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
LIMK1P53667 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
LIMK1P53667 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LIMK1P53667 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LIMK1P53667 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
LIMK1P53667 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
LIMK1P53667 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LIMK1P53667 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LIMK1P53667 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.62■■□□□ 1.05
LIMK1P53667 LINC00543-201ENST00000567234 1845 ntBASIC21.62■■□□□ 1.05
LIMK1P53667 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LIMK1P53667 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.62■■□□□ 1.05
LIMK1P53667 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.62■■□□□ 1.05
LIMK1P53667 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.62■■□□□ 1.05
LIMK1P53667 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
LIMK1P53667 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.62■■□□□ 1.05
LIMK1P53667 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
LIMK1P53667 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.62■■□□□ 1.05
LIMK1P53667 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.62■■□□□ 1.05
LIMK1P53667 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.62■■□□□ 1.05
LIMK1P53667 AL138781.1-201ENST00000566567 1274 ntBASIC21.62■■□□□ 1.05
LIMK1P53667 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.62■■□□□ 1.05
LIMK1P53667 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.62■■□□□ 1.05
LIMK1P53667 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.62■■□□□ 1.05
LIMK1P53667 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.62■■□□□ 1.05
LIMK1P53667 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.62■■□□□ 1.05
LIMK1P53667 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LIMK1P53667 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LIMK1P53667 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LIMK1P53667 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.61■■□□□ 1.05
LIMK1P53667 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.61■■□□□ 1.05
LIMK1P53667 AC133041.1-202ENST00000642053 222 ntBASIC21.61■■□□□ 1.05
LIMK1P53667 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LIMK1P53667 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LIMK1P53667 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
LIMK1P53667 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms