Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM4P50479 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM4P50479 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM4P50479 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM4P50479 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM4P50479 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM4P50479 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM4P50479 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM4P50479 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM4P50479 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM4P50479 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
PDLIM4P50479 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM4P50479 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM4P50479 AC079630.1-202ENST00000618127 1840 ntBASIC18.51■□□□□ 0.55
PDLIM4P50479 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.51■□□□□ 0.55
PDLIM4P50479 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM4P50479 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM4P50479 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM4P50479 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
PDLIM4P50479 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
PDLIM4P50479 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.5■□□□□ 0.55
PDLIM4P50479 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM4P50479 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
PDLIM4P50479 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM4P50479 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
PDLIM4P50479 AC090192.1-201ENST00000517740 490 ntBASIC18.5■□□□□ 0.55
PDLIM4P50479 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.5■□□□□ 0.55
PDLIM4P50479 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.5■□□□□ 0.55
PDLIM4P50479 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.55
PDLIM4P50479 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.5■□□□□ 0.55
PDLIM4P50479 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM4P50479 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
PDLIM4P50479 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM4P50479 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM4P50479 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM4P50479 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM4P50479 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
PDLIM4P50479 AC004687.1-201ENST00000579003 1625 ntBASIC18.49■□□□□ 0.55
PDLIM4P50479 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM4P50479 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM4P50479 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.49■□□□□ 0.55
PDLIM4P50479 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.49■□□□□ 0.55
PDLIM4P50479 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM4P50479 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM4P50479 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM4P50479 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
PDLIM4P50479 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.49■□□□□ 0.55
PDLIM4P50479 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM4P50479 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM4P50479 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM4P50479 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC18.48■□□□□ 0.55
PDLIM4P50479 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.48■□□□□ 0.55
PDLIM4P50479 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM4P50479 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM4P50479 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC18.47■□□□□ 0.55
PDLIM4P50479 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.47■□□□□ 0.55
PDLIM4P50479 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM4P50479 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC18.47■□□□□ 0.55
PDLIM4P50479 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
PDLIM4P50479 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM4P50479 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM4P50479 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.47■□□□□ 0.55
PDLIM4P50479 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM4P50479 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM4P50479 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.47■□□□□ 0.55
PDLIM4P50479 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.47■□□□□ 0.55
PDLIM4P50479 AC004911.1-201ENST00000416316 871 ntBASIC18.47■□□□□ 0.55
PDLIM4P50479 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.47■□□□□ 0.55
PDLIM4P50479 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM4P50479 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.47■□□□□ 0.55
PDLIM4P50479 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
PDLIM4P50479 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
PDLIM4P50479 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.47■□□□□ 0.55
PDLIM4P50479 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM4P50479 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM4P50479 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
PDLIM4P50479 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC18.47■□□□□ 0.55
PDLIM4P50479 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
PDLIM4P50479 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM4P50479 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM4P50479 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM4P50479 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM4P50479 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
PDLIM4P50479 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM4P50479 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
PDLIM4P50479 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM4P50479 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM4P50479 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.46■□□□□ 0.55
PDLIM4P50479 AC092437.1-201ENST00000624794 1048 ntBASIC18.46■□□□□ 0.55
PDLIM4P50479 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
PDLIM4P50479 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
PDLIM4P50479 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.45■□□□□ 0.54
PDLIM4P50479 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PDLIM4P50479 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.45■□□□□ 0.54
PDLIM4P50479 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC18.45■□□□□ 0.54
PDLIM4P50479 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PDLIM4P50479 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.45■□□□□ 0.54
PDLIM4P50479 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PDLIM4P50479 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PDLIM4P50479 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms