Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PTPN9P43378 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC22.76■■□□□ 1.23
PTPN9P43378 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC22.76■■□□□ 1.23
PTPN9P43378 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PTPN9P43378 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
PTPN9P43378 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC22.76■■□□□ 1.23
PTPN9P43378 AC233992.3-201ENST00000607491 485 ntBASIC22.76■■□□□ 1.23
PTPN9P43378 AC087239.1-201ENST00000622671 572 ntBASIC22.76■■□□□ 1.23
PTPN9P43378 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
PTPN9P43378 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
PTPN9P43378 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC22.76■■□□□ 1.23
PTPN9P43378 EDA-201ENST00000338901 1233 ntBASIC22.75■■□□□ 1.23
PTPN9P43378 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC22.75■■□□□ 1.23
PTPN9P43378 AC010141.3-201ENST00000456659 717 ntBASIC22.75■■□□□ 1.23
PTPN9P43378 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC22.75■■□□□ 1.23
PTPN9P43378 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC22.75■■□□□ 1.23
PTPN9P43378 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
PTPN9P43378 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
PTPN9P43378 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
PTPN9P43378 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
PTPN9P43378 LSR-203ENST00000360798 1963 ntTSL 2 BASIC22.74■■□□□ 1.23
PTPN9P43378 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
PTPN9P43378 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC22.74■■□□□ 1.23
PTPN9P43378 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
PTPN9P43378 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC22.74■■□□□ 1.23
PTPN9P43378 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
PTPN9P43378 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.74■■□□□ 1.23
PTPN9P43378 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC22.74■■□□□ 1.23
PTPN9P43378 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC22.74■■□□□ 1.23
PTPN9P43378 AL139246.5-201ENST00000606645 996 ntBASIC22.74■■□□□ 1.23
PTPN9P43378 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
PTPN9P43378 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
PTPN9P43378 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC22.73■■□□□ 1.23
PTPN9P43378 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC22.73■■□□□ 1.23
PTPN9P43378 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC22.73■■□□□ 1.23
PTPN9P43378 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PTPN9P43378 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PTPN9P43378 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC22.73■■□□□ 1.23
PTPN9P43378 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
PTPN9P43378 AC079089.2-201ENST00000531211 1277 ntBASIC22.73■■□□□ 1.23
PTPN9P43378 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC22.73■■□□□ 1.23
PTPN9P43378 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
PTPN9P43378 AC133561.4-201ENST00000566112 224 ntBASIC22.73■■□□□ 1.23
PTPN9P43378 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
PTPN9P43378 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC22.73■■□□□ 1.23
PTPN9P43378 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
PTPN9P43378 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PTPN9P43378 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC22.73■■□□□ 1.23
PTPN9P43378 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PTPN9P43378 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PTPN9P43378 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PTPN9P43378 LINC00526-201ENST00000581067 1875 ntBASIC22.73■■□□□ 1.23
PTPN9P43378 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC22.72■■□□□ 1.23
PTPN9P43378 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
PTPN9P43378 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
PTPN9P43378 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PTPN9P43378 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PTPN9P43378 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PTPN9P43378 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
PTPN9P43378 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
PTPN9P43378 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.72■■□□□ 1.23
PTPN9P43378 GRAMD4P4-201ENST00000613563 1115 ntBASIC22.72■■□□□ 1.23
PTPN9P43378 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PTPN9P43378 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC22.72■■□□□ 1.23
PTPN9P43378 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC22.72■■□□□ 1.23
PTPN9P43378 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PTPN9P43378 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC22.71■■□□□ 1.23
PTPN9P43378 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
PTPN9P43378 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PTPN9P43378 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PTPN9P43378 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
PTPN9P43378 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.71■■□□□ 1.23
PTPN9P43378 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PTPN9P43378 AL031432.3-201ENST00000607698 485 ntBASIC22.71■■□□□ 1.23
PTPN9P43378 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC22.71■■□□□ 1.23
PTPN9P43378 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PTPN9P43378 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC22.71■■□□□ 1.23
PTPN9P43378 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC22.71■■□□□ 1.23
PTPN9P43378 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PTPN9P43378 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
PTPN9P43378 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
PTPN9P43378 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC22.7■■□□□ 1.22
PTPN9P43378 AP001330.3-201ENST00000520123 633 ntBASIC22.7■■□□□ 1.22
PTPN9P43378 AC027682.1-201ENST00000562846 899 ntBASIC22.7■■□□□ 1.22
PTPN9P43378 AL355001.2-201ENST00000620617 1191 ntBASIC22.7■■□□□ 1.22
PTPN9P43378 OXCT2P1-201ENST00000447263 1535 ntBASIC22.7■■□□□ 1.22
PTPN9P43378 AC079834.2-201ENST00000609776 1949 ntBASIC22.7■■□□□ 1.22
PTPN9P43378 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PTPN9P43378 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PTPN9P43378 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC22.69■■□□□ 1.22
PTPN9P43378 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
PTPN9P43378 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PTPN9P43378 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PTPN9P43378 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC22.69■■□□□ 1.22
PTPN9P43378 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PTPN9P43378 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.69■■□□□ 1.22
PTPN9P43378 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
PTPN9P43378 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
PTPN9P43378 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
PTPN9P43378 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms