Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM13O60858 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM13O60858 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM13O60858 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM13O60858 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.46■■□□□ 1.03
TRIM13O60858 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM13O60858 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM13O60858 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM13O60858 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.46■■□□□ 1.03
TRIM13O60858 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.46■■□□□ 1.03
TRIM13O60858 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.46■■□□□ 1.03
TRIM13O60858 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM13O60858 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM13O60858 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.46■■□□□ 1.03
TRIM13O60858 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
TRIM13O60858 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.46■■□□□ 1.03
TRIM13O60858 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM13O60858 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM13O60858 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM13O60858 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
TRIM13O60858 AL024507.2-201ENST00000606070 2574 ntBASIC21.45■■□□□ 1.03
TRIM13O60858 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM13O60858 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.45■■□□□ 1.02
TRIM13O60858 AC009102.2-201ENST00000606772 1639 ntBASIC21.45■■□□□ 1.02
TRIM13O60858 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM13O60858 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.45■■□□□ 1.02
TRIM13O60858 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.45■■□□□ 1.02
TRIM13O60858 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.45■■□□□ 1.02
TRIM13O60858 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM13O60858 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM13O60858 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.45■■□□□ 1.02
TRIM13O60858 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM13O60858 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM13O60858 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.44■■□□□ 1.02
TRIM13O60858 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.44■■□□□ 1.02
TRIM13O60858 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM13O60858 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM13O60858 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
TRIM13O60858 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
TRIM13O60858 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM13O60858 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM13O60858 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.43■■□□□ 1.02
TRIM13O60858 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM13O60858 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM13O60858 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM13O60858 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM13O60858 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM13O60858 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM13O60858 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.43■■□□□ 1.02
TRIM13O60858 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM13O60858 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM13O60858 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM13O60858 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
TRIM13O60858 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM13O60858 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
TRIM13O60858 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.42■■□□□ 1.02
TRIM13O60858 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM13O60858 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.02
TRIM13O60858 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM13O60858 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM13O60858 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM13O60858 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.42■■□□□ 1.02
TRIM13O60858 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM13O60858 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.42■■□□□ 1.02
TRIM13O60858 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.42■■□□□ 1.02
TRIM13O60858 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
TRIM13O60858 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM13O60858 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
TRIM13O60858 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM13O60858 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM13O60858 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
TRIM13O60858 AC244015.2-201ENST00000616358 1861 ntBASIC21.41■■□□□ 1.02
TRIM13O60858 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM13O60858 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.41■■□□□ 1.02
TRIM13O60858 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.41■■□□□ 1.02
TRIM13O60858 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM13O60858 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM13O60858 AC092028.1-203ENST00000608262 953 ntBASIC21.41■■□□□ 1.02
TRIM13O60858 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM13O60858 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM13O60858 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
TRIM13O60858 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM13O60858 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM13O60858 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM13O60858 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM13O60858 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
TRIM13O60858 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM13O60858 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.41■■□□□ 1.02
TRIM13O60858 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM13O60858 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM13O60858 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.41■■□□□ 1.02
TRIM13O60858 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM13O60858 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM13O60858 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.4■■□□□ 1.02
TRIM13O60858 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.4■■□□□ 1.02
TRIM13O60858 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM13O60858 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM13O60858 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM13O60858 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.4■■□□□ 1.02
TRIM13O60858 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms