Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC3O15379 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC3O15379 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
HDAC3O15379 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC3O15379 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.23■□□□□ 0.99
HDAC3O15379 AC005229.4-201ENST00000610085 2198 ntBASIC21.23■□□□□ 0.99
HDAC3O15379 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC3O15379 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC3O15379 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC3O15379 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC3O15379 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
HDAC3O15379 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC3O15379 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC3O15379 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.23■□□□□ 0.99
HDAC3O15379 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.23■□□□□ 0.99
HDAC3O15379 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.23■□□□□ 0.99
HDAC3O15379 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC3O15379 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC3O15379 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC3O15379 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC3O15379 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
HDAC3O15379 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.23■□□□□ 0.99
HDAC3O15379 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC3O15379 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HDAC3O15379 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC3O15379 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC3O15379 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC3O15379 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC3O15379 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC3O15379 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
HDAC3O15379 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC3O15379 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
HDAC3O15379 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC3O15379 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HDAC3O15379 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC3O15379 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC3O15379 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC3O15379 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC3O15379 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
HDAC3O15379 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC3O15379 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC3O15379 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.21■□□□□ 0.99
HDAC3O15379 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.21■□□□□ 0.99
HDAC3O15379 AC103724.3-201ENST00000564481 992 ntBASIC21.21■□□□□ 0.99
HDAC3O15379 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.21■□□□□ 0.99
HDAC3O15379 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC3O15379 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.21■□□□□ 0.99
HDAC3O15379 AC004687.1-201ENST00000579003 1625 ntBASIC21.21■□□□□ 0.99
HDAC3O15379 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC3O15379 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC3O15379 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC3O15379 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HDAC3O15379 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.21■□□□□ 0.99
HDAC3O15379 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
HDAC3O15379 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.2■□□□□ 0.99
HDAC3O15379 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
HDAC3O15379 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
HDAC3O15379 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.2■□□□□ 0.98
HDAC3O15379 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HDAC3O15379 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.2■□□□□ 0.98
HDAC3O15379 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.2■□□□□ 0.98
HDAC3O15379 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HDAC3O15379 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HDAC3O15379 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HDAC3O15379 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
HDAC3O15379 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC3O15379 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.19■□□□□ 0.98
HDAC3O15379 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC3O15379 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC3O15379 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC3O15379 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC3O15379 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
HDAC3O15379 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC3O15379 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.19■□□□□ 0.98
HDAC3O15379 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC3O15379 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC3O15379 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.18■□□□□ 0.98
HDAC3O15379 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.18■□□□□ 0.98
HDAC3O15379 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HDAC3O15379 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
HDAC3O15379 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HDAC3O15379 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
HDAC3O15379 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.18■□□□□ 0.98
HDAC3O15379 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
HDAC3O15379 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HDAC3O15379 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HDAC3O15379 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
HDAC3O15379 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HDAC3O15379 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
HDAC3O15379 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HDAC3O15379 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.17■□□□□ 0.98
HDAC3O15379 YBX1P4-201ENST00000392794 808 ntBASIC21.17■□□□□ 0.98
HDAC3O15379 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.17■□□□□ 0.98
HDAC3O15379 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
HDAC3O15379 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.17■□□□□ 0.98
HDAC3O15379 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
HDAC3O15379 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDAC3O15379 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDAC3O15379 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDAC3O15379 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms