Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDX4O14627 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDX4O14627 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDX4O14627 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDX4O14627 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDX4O14627 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDX4O14627 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDX4O14627 POU5F1P3-201ENST00000428824 1078 ntBASIC21.34■■□□□ 1.01
CDX4O14627 AF201337.1-201ENST00000520239 748 ntBASIC21.34■■□□□ 1.01
CDX4O14627 AC098934.4-201ENST00000564127 592 ntBASIC21.34■■□□□ 1.01
CDX4O14627 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.34■■□□□ 1.01
CDX4O14627 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
CDX4O14627 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.34■■□□□ 1.01
CDX4O14627 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDX4O14627 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1.01
CDX4O14627 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.33■■□□□ 1.01
CDX4O14627 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDX4O14627 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDX4O14627 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDX4O14627 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CDX4O14627 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.33■■□□□ 1.01
CDX4O14627 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.33■■□□□ 1.01
CDX4O14627 AP003733.4-201ENST00000623785 1697 ntBASIC21.33■■□□□ 1
CDX4O14627 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CDX4O14627 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
CDX4O14627 AC005224.4-201ENST00000583262 1652 ntBASIC21.32■■□□□ 1
CDX4O14627 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CDX4O14627 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.32■■□□□ 1
CDX4O14627 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.32■■□□□ 1
CDX4O14627 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.32■■□□□ 1
CDX4O14627 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.32■■□□□ 1
CDX4O14627 ITM2C-210ENST00000620962 501 ntBASIC21.32■■□□□ 1
CDX4O14627 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.32■■□□□ 1
CDX4O14627 MYCNOS-205ENST00000641950 531 ntBASIC21.32■■□□□ 1
CDX4O14627 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.32■■□□□ 1
CDX4O14627 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.31■■□□□ 1
CDX4O14627 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.31■■□□□ 1
CDX4O14627 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.31■■□□□ 1
CDX4O14627 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.31■■□□□ 1
CDX4O14627 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
CDX4O14627 CNN2P6-201ENST00000439038 900 ntBASIC21.31■■□□□ 1
CDX4O14627 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.31■■□□□ 1
CDX4O14627 AC105036.2-201ENST00000569468 176 ntBASIC21.31■■□□□ 1
CDX4O14627 AC133552.2-202ENST00000575694 574 ntBASIC21.31■■□□□ 1
CDX4O14627 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.31■■□□□ 1
CDX4O14627 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDX4O14627 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.3■■□□□ 1
CDX4O14627 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.3■■□□□ 1
CDX4O14627 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.3■■□□□ 1
CDX4O14627 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDX4O14627 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
CDX4O14627 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CDX4O14627 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.29■■□□□ 1
CDX4O14627 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDX4O14627 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CDX4O14627 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.29■■□□□ 1
CDX4O14627 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.29■■□□□ 1
CDX4O14627 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDX4O14627 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.29■■□□□ 1
CDX4O14627 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.29■■□□□ 1
CDX4O14627 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.29■■□□□ 1
CDX4O14627 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDX4O14627 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.29■■□□□ 1
CDX4O14627 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDX4O14627 AC022211.4-201ENST00000625094 2161 ntBASIC21.29■■□□□ 1
CDX4O14627 KRT18P29-201ENST00000397031 1267 ntBASIC21.28■■□□□ 1
CDX4O14627 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CDX4O14627 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.28■■□□□ 1
CDX4O14627 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
CDX4O14627 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.28■■□□□ 1
CDX4O14627 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDX4O14627 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CDX4O14627 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDX4O14627 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CDX4O14627 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CDX4O14627 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.27■■□□□ 1
CDX4O14627 PRORSD1P-201ENST00000295112 541 ntBASIC21.27■■□□□ 1
CDX4O14627 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.27■■□□□ 1
CDX4O14627 AP001160.3-201ENST00000601484 763 ntBASIC21.27■■□□□ 1
CDX4O14627 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDX4O14627 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDX4O14627 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CDX4O14627 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX4O14627 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDX4O14627 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CDX4O14627 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX4O14627 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX4O14627 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
CDX4O14627 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX4O14627 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.26■□□□□ 0.99
CDX4O14627 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
CDX4O14627 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.26■□□□□ 0.99
CDX4O14627 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDX4O14627 AC009237.3-201ENST00000393279 1427 ntBASIC21.26■□□□□ 0.99
CDX4O14627 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX4O14627 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CDX4O14627 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
CDX4O14627 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.26■□□□□ 0.99
CDX4O14627 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDX4O14627 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms