Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AC241377.3-202ENST00000626088 1088 ntBASIC21.02■□□□□ 0.96
SLC28A1O00337 AC241585.3-202ENST00000628937 1088 ntBASIC21.02■□□□□ 0.96
SLC28A1O00337 AC245100.8-202ENST00000629247 1058 ntBASIC21.02■□□□□ 0.96
SLC28A1O00337 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SLC28A1O00337 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.95
SLC28A1O00337 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC28A1O00337 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.01■□□□□ 0.95
SLC28A1O00337 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC28A1O00337 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC28A1O00337 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC28A1O00337 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SLC28A1O00337 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.01■□□□□ 0.95
SLC28A1O00337 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.01■□□□□ 0.95
SLC28A1O00337 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SLC28A1O00337 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SLC28A1O00337 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SLC28A1O00337 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.01■□□□□ 0.95
SLC28A1O00337 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
SLC28A1O00337 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.01■□□□□ 0.95
SLC28A1O00337 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC28A1O00337 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC28A1O00337 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC28A1O00337 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC28A1O00337 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.01■□□□□ 0.95
SLC28A1O00337 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.01■□□□□ 0.95
SLC28A1O00337 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SLC28A1O00337 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC28A1O00337 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC28A1O00337 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC28A1O00337 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC28A1O00337 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SLC28A1O00337 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21■□□□□ 0.95
SLC28A1O00337 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21■□□□□ 0.95
SLC28A1O00337 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21■□□□□ 0.95
SLC28A1O00337 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SLC28A1O00337 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SLC28A1O00337 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21■□□□□ 0.95
SLC28A1O00337 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21■□□□□ 0.95
SLC28A1O00337 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SLC28A1O00337 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21■□□□□ 0.95
SLC28A1O00337 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
SLC28A1O00337 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
SLC28A1O00337 FBXW4P1-201ENST00000426721 2239 ntBASIC21■□□□□ 0.95
SLC28A1O00337 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
SLC28A1O00337 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SLC28A1O00337 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SLC28A1O00337 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SLC28A1O00337 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.99■□□□□ 0.95
SLC28A1O00337 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SLC28A1O00337 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.99■□□□□ 0.95
SLC28A1O00337 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.99■□□□□ 0.95
SLC28A1O00337 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SLC28A1O00337 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SLC28A1O00337 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SLC28A1O00337 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SLC28A1O00337 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.99■□□□□ 0.95
SLC28A1O00337 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SLC28A1O00337 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.98■□□□□ 0.95
SLC28A1O00337 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SLC28A1O00337 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
SLC28A1O00337 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SLC28A1O00337 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SLC28A1O00337 KRT16P3-201ENST00000439127 1283 ntBASIC20.98■□□□□ 0.95
SLC28A1O00337 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.98■□□□□ 0.95
SLC28A1O00337 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
SLC28A1O00337 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
SLC28A1O00337 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.98■□□□□ 0.95
SLC28A1O00337 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SLC28A1O00337 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SLC28A1O00337 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC28A1O00337 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC28A1O00337 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.97■□□□□ 0.95
SLC28A1O00337 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC28A1O00337 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC28A1O00337 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC28A1O00337 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.97■□□□□ 0.95
SLC28A1O00337 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SLC28A1O00337 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.97■□□□□ 0.95
SLC28A1O00337 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC28A1O00337 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
SLC28A1O00337 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC28A1O00337 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SLC28A1O00337 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SLC28A1O00337 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC28A1O00337 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SLC28A1O00337 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SLC28A1O00337 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SLC28A1O00337 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SLC28A1O00337 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.96■□□□□ 0.95
SLC28A1O00337 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.96■□□□□ 0.95
SLC28A1O00337 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.96■□□□□ 0.95
SLC28A1O00337 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SLC28A1O00337 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SLC28A1O00337 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.96■□□□□ 0.95
SLC28A1O00337 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SLC28A1O00337 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SLC28A1O00337 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SLC28A1O00337 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
SLC28A1O00337 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SLC28A1O00337 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms