Protein–RNA interactions for Protein: A7MD48

SRRM4, Serine/arginine repetitive matrix protein 4, humanhuman

Known RBP Predictions only

Length 611 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM4A7MD48 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SRRM4A7MD48 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SRRM4A7MD48 AL356441.2-201ENST00000443009 864 ntBASIC17.6■□□□□ 0.41
SRRM4A7MD48 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC17.6■□□□□ 0.41
SRRM4A7MD48 pRNA.6-201ENST00000610482 90 ntBASIC17.6■□□□□ 0.41
SRRM4A7MD48 pRNA.5-201ENST00000612139 90 ntBASIC17.6■□□□□ 0.41
SRRM4A7MD48 pRNA.11-201ENST00000618423 90 ntBASIC17.6■□□□□ 0.41
SRRM4A7MD48 pRNA.13-201ENST00000619112 90 ntBASIC17.6■□□□□ 0.41
SRRM4A7MD48 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SRRM4A7MD48 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.6■□□□□ 0.41
SRRM4A7MD48 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SRRM4A7MD48 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.6■□□□□ 0.41
SRRM4A7MD48 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SRRM4A7MD48 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SRRM4A7MD48 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SRRM4A7MD48 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SRRM4A7MD48 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SRRM4A7MD48 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SRRM4A7MD48 AC133637.1-201ENST00000624115 1537 ntBASIC17.59■□□□□ 0.41
SRRM4A7MD48 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
SRRM4A7MD48 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC17.59■□□□□ 0.41
SRRM4A7MD48 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
SRRM4A7MD48 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SRRM4A7MD48 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SRRM4A7MD48 AL512631.2-201ENST00000604634 923 ntBASIC17.59■□□□□ 0.41
SRRM4A7MD48 CA15P2-201ENST00000611168 834 ntBASIC17.59■□□□□ 0.41
SRRM4A7MD48 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SRRM4A7MD48 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC17.59■□□□□ 0.41
SRRM4A7MD48 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SRRM4A7MD48 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.59■□□□□ 0.41
SRRM4A7MD48 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC17.59■□□□□ 0.41
SRRM4A7MD48 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SRRM4A7MD48 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SRRM4A7MD48 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SRRM4A7MD48 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC17.58■□□□□ 0.41
SRRM4A7MD48 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.58■□□□□ 0.41
SRRM4A7MD48 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SRRM4A7MD48 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC17.58■□□□□ 0.4
SRRM4A7MD48 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SRRM4A7MD48 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SRRM4A7MD48 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
SRRM4A7MD48 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRRM4A7MD48 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC17.57■□□□□ 0.4
SRRM4A7MD48 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRRM4A7MD48 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC17.57■□□□□ 0.4
SRRM4A7MD48 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRRM4A7MD48 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRRM4A7MD48 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SRRM4A7MD48 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SRRM4A7MD48 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRRM4A7MD48 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SRRM4A7MD48 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.56■□□□□ 0.4
SRRM4A7MD48 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC17.56■□□□□ 0.4
SRRM4A7MD48 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRRM4A7MD48 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRRM4A7MD48 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC17.56■□□□□ 0.4
SRRM4A7MD48 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC17.56■□□□□ 0.4
SRRM4A7MD48 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC17.56■□□□□ 0.4
SRRM4A7MD48 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
SRRM4A7MD48 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SRRM4A7MD48 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRRM4A7MD48 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRRM4A7MD48 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SRRM4A7MD48 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SRRM4A7MD48 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.55■□□□□ 0.4
SRRM4A7MD48 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SRRM4A7MD48 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
SRRM4A7MD48 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SRRM4A7MD48 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SRRM4A7MD48 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SRRM4A7MD48 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SRRM4A7MD48 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SRRM4A7MD48 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SRRM4A7MD48 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC17.55■□□□□ 0.4
SRRM4A7MD48 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SRRM4A7MD48 SRR-208ENST00000576848 588 ntTSL 4 BASIC17.55■□□□□ 0.4
SRRM4A7MD48 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC17.55■□□□□ 0.4
SRRM4A7MD48 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SRRM4A7MD48 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
SRRM4A7MD48 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC17.54■□□□□ 0.4
SRRM4A7MD48 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRRM4A7MD48 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRRM4A7MD48 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRRM4A7MD48 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SRRM4A7MD48 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SRRM4A7MD48 SRD5A1P1-201ENST00000442297 786 ntBASIC17.54■□□□□ 0.4
SRRM4A7MD48 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC17.54■□□□□ 0.4
SRRM4A7MD48 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SRRM4A7MD48 MIR3181-201ENST00000578512 73 ntBASIC17.54■□□□□ 0.4
SRRM4A7MD48 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC17.54■□□□□ 0.4
SRRM4A7MD48 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC17.54■□□□□ 0.4
SRRM4A7MD48 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC17.54■□□□□ 0.4
SRRM4A7MD48 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SRRM4A7MD48 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SRRM4A7MD48 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRRM4A7MD48 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SRRM4A7MD48 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SRRM4A7MD48 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.53■□□□□ 0.4
SRRM4A7MD48 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SRRM4A7MD48 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms