Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC163A0A0D9SF12 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CCDC163A0A0D9SF12 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC163A0A0D9SF12 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
CCDC163A0A0D9SF12 AC073210.2-201ENST00000430369 194 ntBASIC21.84■■□□□ 1.09
CCDC163A0A0D9SF12 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.84■■□□□ 1.09
CCDC163A0A0D9SF12 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
CCDC163A0A0D9SF12 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.84■■□□□ 1.09
CCDC163A0A0D9SF12 AC104187.1-201ENST00000607510 612 ntBASIC21.84■■□□□ 1.09
CCDC163A0A0D9SF12 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC163A0A0D9SF12 AC005224.4-201ENST00000583262 1652 ntBASIC21.84■■□□□ 1.09
CCDC163A0A0D9SF12 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC163A0A0D9SF12 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.84■■□□□ 1.09
CCDC163A0A0D9SF12 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.84■■□□□ 1.09
CCDC163A0A0D9SF12 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.84■■□□□ 1.09
CCDC163A0A0D9SF12 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC163A0A0D9SF12 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC163A0A0D9SF12 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC163A0A0D9SF12 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC163A0A0D9SF12 SLC29A4P1-201ENST00000398760 971 ntBASIC21.83■■□□□ 1.09
CCDC163A0A0D9SF12 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC163A0A0D9SF12 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.83■■□□□ 1.09
CCDC163A0A0D9SF12 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.83■■□□□ 1.08
CCDC163A0A0D9SF12 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC163A0A0D9SF12 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC163A0A0D9SF12 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.82■■□□□ 1.08
CCDC163A0A0D9SF12 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.82■■□□□ 1.08
CCDC163A0A0D9SF12 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC163A0A0D9SF12 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC163A0A0D9SF12 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC163A0A0D9SF12 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC163A0A0D9SF12 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CCDC163A0A0D9SF12 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC163A0A0D9SF12 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CCDC163A0A0D9SF12 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.81■■□□□ 1.08
CCDC163A0A0D9SF12 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
CCDC163A0A0D9SF12 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC163A0A0D9SF12 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC163A0A0D9SF12 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CCDC163A0A0D9SF12 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC163A0A0D9SF12 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
CCDC163A0A0D9SF12 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC163A0A0D9SF12 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC163A0A0D9SF12 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC163A0A0D9SF12 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC163A0A0D9SF12 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC163A0A0D9SF12 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.8■■□□□ 1.08
CCDC163A0A0D9SF12 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.8■■□□□ 1.08
CCDC163A0A0D9SF12 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.8■■□□□ 1.08
CCDC163A0A0D9SF12 AC133041.1-202ENST00000642053 222 ntBASIC21.8■■□□□ 1.08
CCDC163A0A0D9SF12 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC163A0A0D9SF12 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC163A0A0D9SF12 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.79■■□□□ 1.08
CCDC163A0A0D9SF12 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC163A0A0D9SF12 AC079630.1-202ENST00000618127 1840 ntBASIC21.79■■□□□ 1.08
CCDC163A0A0D9SF12 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CCDC163A0A0D9SF12 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC163A0A0D9SF12 AC069152.1-201ENST00000438030 544 ntBASIC21.79■■□□□ 1.08
CCDC163A0A0D9SF12 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.79■■□□□ 1.08
CCDC163A0A0D9SF12 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.79■■□□□ 1.08
CCDC163A0A0D9SF12 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC163A0A0D9SF12 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.79■■□□□ 1.08
CCDC163A0A0D9SF12 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.79■■□□□ 1.08
CCDC163A0A0D9SF12 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.79■■□□□ 1.08
CCDC163A0A0D9SF12 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC163A0A0D9SF12 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC163A0A0D9SF12 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC163A0A0D9SF12 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC163A0A0D9SF12 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC163A0A0D9SF12 AC133552.2-202ENST00000575694 574 ntBASIC21.78■■□□□ 1.08
CCDC163A0A0D9SF12 UBE2DNL-204ENST00000602536 740 ntBASIC21.78■■□□□ 1.08
CCDC163A0A0D9SF12 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.78■■□□□ 1.08
CCDC163A0A0D9SF12 MYCNOS-205ENST00000641950 531 ntBASIC21.78■■□□□ 1.08
CCDC163A0A0D9SF12 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC163A0A0D9SF12 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.77■■□□□ 1.08
CCDC163A0A0D9SF12 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CCDC163A0A0D9SF12 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CCDC163A0A0D9SF12 AL138781.1-201ENST00000566567 1274 ntBASIC21.77■■□□□ 1.08
CCDC163A0A0D9SF12 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC163A0A0D9SF12 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
CCDC163A0A0D9SF12 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC163A0A0D9SF12 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC163A0A0D9SF12 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
CCDC163A0A0D9SF12 FAM201B-201ENST00000458407 597 ntBASIC21.76■■□□□ 1.07
CCDC163A0A0D9SF12 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
CCDC163A0A0D9SF12 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC163A0A0D9SF12 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC163A0A0D9SF12 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.75■■□□□ 1.07
CCDC163A0A0D9SF12 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC163A0A0D9SF12 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC163A0A0D9SF12 AF201337.1-201ENST00000520239 748 ntBASIC21.75■■□□□ 1.07
CCDC163A0A0D9SF12 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.75■■□□□ 1.07
CCDC163A0A0D9SF12 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC163A0A0D9SF12 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC163A0A0D9SF12 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
CCDC163A0A0D9SF12 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC163A0A0D9SF12 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CCDC163A0A0D9SF12 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC163A0A0D9SF12 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
CCDC163A0A0D9SF12 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms