Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV3A0A0B4J244 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV3A0A0B4J244 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAV3A0A0B4J244 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAV3A0A0B4J244 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC17.56■□□□□ 0.4
TRAV3A0A0B4J244 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV3A0A0B4J244 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV3A0A0B4J244 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV3A0A0B4J244 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV3A0A0B4J244 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV3A0A0B4J244 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV3A0A0B4J244 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV3A0A0B4J244 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV3A0A0B4J244 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
TRAV3A0A0B4J244 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV3A0A0B4J244 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
TRAV3A0A0B4J244 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC17.55■□□□□ 0.4
TRAV3A0A0B4J244 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC17.55■□□□□ 0.4
TRAV3A0A0B4J244 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV3A0A0B4J244 AC010542.4-201ENST00000563151 1910 ntBASIC17.55■□□□□ 0.4
TRAV3A0A0B4J244 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV3A0A0B4J244 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
TRAV3A0A0B4J244 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV3A0A0B4J244 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV3A0A0B4J244 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV3A0A0B4J244 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.54■□□□□ 0.4
TRAV3A0A0B4J244 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC17.54■□□□□ 0.4
TRAV3A0A0B4J244 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC17.54■□□□□ 0.4
TRAV3A0A0B4J244 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV3A0A0B4J244 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TRAV3A0A0B4J244 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC17.54■□□□□ 0.4
TRAV3A0A0B4J244 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV3A0A0B4J244 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV3A0A0B4J244 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.54■□□□□ 0.4
TRAV3A0A0B4J244 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 CA15P2-201ENST00000611168 834 ntBASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 MIR6724-1-201ENST00000616420 92 ntBASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 MIR6724-2-201ENST00000616483 92 ntBASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 MIR6724-4-201ENST00000617390 92 ntBASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 MIR6724-3-201ENST00000622482 92 ntBASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 FAM99A-202ENST00000538190 1989 ntBASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV3A0A0B4J244 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
TRAV3A0A0B4J244 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV3A0A0B4J244 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
TRAV3A0A0B4J244 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV3A0A0B4J244 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV3A0A0B4J244 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC17.52■□□□□ 0.4
TRAV3A0A0B4J244 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
TRAV3A0A0B4J244 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV3A0A0B4J244 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC17.52■□□□□ 0.4
TRAV3A0A0B4J244 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC17.52■□□□□ 0.4
TRAV3A0A0B4J244 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV3A0A0B4J244 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
TRAV3A0A0B4J244 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.52■□□□□ 0.39
TRAV3A0A0B4J244 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV3A0A0B4J244 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 AL499627.2-201ENST00000606283 725 ntBASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 AL117332.1-201ENST00000622628 974 ntBASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAV3A0A0B4J244 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
TRAV3A0A0B4J244 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV3A0A0B4J244 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV3A0A0B4J244 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
TRAV3A0A0B4J244 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV3A0A0B4J244 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
TRAV3A0A0B4J244 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV3A0A0B4J244 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV3A0A0B4J244 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV3A0A0B4J244 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV3A0A0B4J244 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV3A0A0B4J244 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
TRAV3A0A0B4J244 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms