Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HIF3AQ9Y2N7 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
HIF3AQ9Y2N7 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HIF3AQ9Y2N7 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.75■□□□□ 0.75
HIF3AQ9Y2N7 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.75■□□□□ 0.75
HIF3AQ9Y2N7 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HIF3AQ9Y2N7 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HIF3AQ9Y2N7 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HIF3AQ9Y2N7 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.75■□□□□ 0.75
HIF3AQ9Y2N7 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
HIF3AQ9Y2N7 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.74■□□□□ 0.75
HIF3AQ9Y2N7 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 AC137767.1-201ENST00000602918 1920 ntBASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 CA15P2-201ENST00000611168 834 ntBASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 C11orf96-202ENST00000528572 1834 ntBASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
HIF3AQ9Y2N7 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 MIR3621-201ENST00000580529 85 ntBASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 AL356740.2-201ENST00000601559 647 ntBASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HIF3AQ9Y2N7 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HIF3AQ9Y2N7 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.71■□□□□ 0.75
HIF3AQ9Y2N7 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HIF3AQ9Y2N7 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
HIF3AQ9Y2N7 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HIF3AQ9Y2N7 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.71■□□□□ 0.75
HIF3AQ9Y2N7 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HIF3AQ9Y2N7 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HIF3AQ9Y2N7 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.71■□□□□ 0.75
HIF3AQ9Y2N7 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
HIF3AQ9Y2N7 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HIF3AQ9Y2N7 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HIF3AQ9Y2N7 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.7■□□□□ 0.74
HIF3AQ9Y2N7 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.7■□□□□ 0.74
HIF3AQ9Y2N7 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.7■□□□□ 0.74
HIF3AQ9Y2N7 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HIF3AQ9Y2N7 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HIF3AQ9Y2N7 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.7■□□□□ 0.74
HIF3AQ9Y2N7 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
HIF3AQ9Y2N7 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms