Protein–RNA interactions for Protein: Q9P0J7

KCMF1, E3 ubiquitin-protein ligase KCMF1, humanhuman

Predictions only

Length 381 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCMF1Q9P0J7 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KCMF1Q9P0J7 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
KCMF1Q9P0J7 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KCMF1Q9P0J7 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.75■□□□□ 0.91
KCMF1Q9P0J7 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.75■□□□□ 0.91
KCMF1Q9P0J7 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
KCMF1Q9P0J7 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
KCMF1Q9P0J7 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
KCMF1Q9P0J7 SLC47A1P1-202ENST00000449666 945 ntBASIC20.75■□□□□ 0.91
KCMF1Q9P0J7 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.75■□□□□ 0.91
KCMF1Q9P0J7 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.75■□□□□ 0.91
KCMF1Q9P0J7 AC133561.4-201ENST00000566112 224 ntBASIC20.75■□□□□ 0.91
KCMF1Q9P0J7 AC005837.3-201ENST00000612163 286 ntBASIC20.75■□□□□ 0.91
KCMF1Q9P0J7 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.75■□□□□ 0.91
KCMF1Q9P0J7 LINC01960-201ENST00000563759 1884 ntBASIC20.75■□□□□ 0.91
KCMF1Q9P0J7 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
KCMF1Q9P0J7 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
KCMF1Q9P0J7 CLDN5-201ENST00000403084 2357 ntBASIC20.74■□□□□ 0.91
KCMF1Q9P0J7 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.74■□□□□ 0.91
KCMF1Q9P0J7 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
KCMF1Q9P0J7 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
KCMF1Q9P0J7 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.74■□□□□ 0.91
KCMF1Q9P0J7 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.74■□□□□ 0.91
KCMF1Q9P0J7 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
KCMF1Q9P0J7 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
KCMF1Q9P0J7 ESRRAP2-201ENST00000418437 1549 ntBASIC20.73■□□□□ 0.91
KCMF1Q9P0J7 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
KCMF1Q9P0J7 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
KCMF1Q9P0J7 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
KCMF1Q9P0J7 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
KCMF1Q9P0J7 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.73■□□□□ 0.91
KCMF1Q9P0J7 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
KCMF1Q9P0J7 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
KCMF1Q9P0J7 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
KCMF1Q9P0J7 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.73■□□□□ 0.91
KCMF1Q9P0J7 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.73■□□□□ 0.91
KCMF1Q9P0J7 AL031432.3-201ENST00000607698 485 ntBASIC20.73■□□□□ 0.91
KCMF1Q9P0J7 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.73■□□□□ 0.91
KCMF1Q9P0J7 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.73■□□□□ 0.91
KCMF1Q9P0J7 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
KCMF1Q9P0J7 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
KCMF1Q9P0J7 EDA-201ENST00000338901 1233 ntBASIC20.72■□□□□ 0.91
KCMF1Q9P0J7 BX842568.3-201ENST00000418104 571 ntBASIC20.72■□□□□ 0.91
KCMF1Q9P0J7 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.72■□□□□ 0.91
KCMF1Q9P0J7 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.72■□□□□ 0.91
KCMF1Q9P0J7 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
KCMF1Q9P0J7 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
KCMF1Q9P0J7 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
KCMF1Q9P0J7 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
KCMF1Q9P0J7 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
KCMF1Q9P0J7 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
KCMF1Q9P0J7 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
KCMF1Q9P0J7 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
KCMF1Q9P0J7 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KCMF1Q9P0J7 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.71■□□□□ 0.91
KCMF1Q9P0J7 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KCMF1Q9P0J7 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.71■□□□□ 0.91
KCMF1Q9P0J7 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
KCMF1Q9P0J7 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
KCMF1Q9P0J7 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
KCMF1Q9P0J7 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
KCMF1Q9P0J7 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KCMF1Q9P0J7 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.91
KCMF1Q9P0J7 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.91
KCMF1Q9P0J7 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 AC233992.3-201ENST00000607491 485 ntBASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 AL355001.2-201ENST00000620617 1191 ntBASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KCMF1Q9P0J7 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KCMF1Q9P0J7 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
KCMF1Q9P0J7 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KCMF1Q9P0J7 SUDS3P1-201ENST00000505831 966 ntBASIC20.69■□□□□ 0.9
KCMF1Q9P0J7 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.69■□□□□ 0.9
KCMF1Q9P0J7 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
KCMF1Q9P0J7 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
KCMF1Q9P0J7 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
KCMF1Q9P0J7 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KCMF1Q9P0J7 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KCMF1Q9P0J7 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
KCMF1Q9P0J7 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KCMF1Q9P0J7 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
KCMF1Q9P0J7 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.68■□□□□ 0.9
KCMF1Q9P0J7 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
KCMF1Q9P0J7 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KCMF1Q9P0J7 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.68■□□□□ 0.9
KCMF1Q9P0J7 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms