Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
MKS1Q9NXB0 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MKS1Q9NXB0 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.68■■□□□ 1.06
MKS1Q9NXB0 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MKS1Q9NXB0 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.68■■□□□ 1.06
MKS1Q9NXB0 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MKS1Q9NXB0 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MKS1Q9NXB0 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.68■■□□□ 1.06
MKS1Q9NXB0 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MKS1Q9NXB0 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MKS1Q9NXB0 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MKS1Q9NXB0 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
MKS1Q9NXB0 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MKS1Q9NXB0 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MKS1Q9NXB0 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MKS1Q9NXB0 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MKS1Q9NXB0 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
MKS1Q9NXB0 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.67■■□□□ 1.06
MKS1Q9NXB0 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
MKS1Q9NXB0 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.67■■□□□ 1.06
MKS1Q9NXB0 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MKS1Q9NXB0 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
MKS1Q9NXB0 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.67■■□□□ 1.06
MKS1Q9NXB0 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.67■■□□□ 1.06
MKS1Q9NXB0 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MKS1Q9NXB0 AC103724.3-201ENST00000564481 992 ntBASIC21.67■■□□□ 1.06
MKS1Q9NXB0 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
MKS1Q9NXB0 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
MKS1Q9NXB0 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MKS1Q9NXB0 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MKS1Q9NXB0 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MKS1Q9NXB0 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.66■■□□□ 1.06
MKS1Q9NXB0 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
MKS1Q9NXB0 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.66■■□□□ 1.06
MKS1Q9NXB0 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MKS1Q9NXB0 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
MKS1Q9NXB0 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MKS1Q9NXB0 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MKS1Q9NXB0 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.65■■□□□ 1.06
MKS1Q9NXB0 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
MKS1Q9NXB0 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MKS1Q9NXB0 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
MKS1Q9NXB0 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.65■■□□□ 1.06
MKS1Q9NXB0 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MKS1Q9NXB0 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.65■■□□□ 1.06
MKS1Q9NXB0 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
MKS1Q9NXB0 AC004687.1-201ENST00000579003 1625 ntBASIC21.65■■□□□ 1.06
MKS1Q9NXB0 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MKS1Q9NXB0 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
MKS1Q9NXB0 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MKS1Q9NXB0 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.64■■□□□ 1.05
MKS1Q9NXB0 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MKS1Q9NXB0 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.64■■□□□ 1.05
MKS1Q9NXB0 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MKS1Q9NXB0 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.64■■□□□ 1.05
MKS1Q9NXB0 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.64■■□□□ 1.05
MKS1Q9NXB0 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MKS1Q9NXB0 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MKS1Q9NXB0 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
MKS1Q9NXB0 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.63■■□□□ 1.05
MKS1Q9NXB0 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
MKS1Q9NXB0 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.63■■□□□ 1.05
MKS1Q9NXB0 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
MKS1Q9NXB0 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
MKS1Q9NXB0 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MKS1Q9NXB0 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MKS1Q9NXB0 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
MKS1Q9NXB0 AC021242.3-201ENST00000607598 1377 ntBASIC21.62■■□□□ 1.05
MKS1Q9NXB0 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.62■■□□□ 1.05
MKS1Q9NXB0 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MKS1Q9NXB0 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.62■■□□□ 1.05
MKS1Q9NXB0 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.62■■□□□ 1.05
MKS1Q9NXB0 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.62■■□□□ 1.05
MKS1Q9NXB0 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MKS1Q9NXB0 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
MKS1Q9NXB0 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
MKS1Q9NXB0 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MKS1Q9NXB0 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.62■■□□□ 1.05
MKS1Q9NXB0 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
MKS1Q9NXB0 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MKS1Q9NXB0 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MKS1Q9NXB0 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.61■■□□□ 1.05
MKS1Q9NXB0 AC005229.4-201ENST00000610085 2198 ntBASIC21.61■■□□□ 1.05
MKS1Q9NXB0 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.61■■□□□ 1.05
MKS1Q9NXB0 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MKS1Q9NXB0 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
MKS1Q9NXB0 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MKS1Q9NXB0 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
MKS1Q9NXB0 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MKS1Q9NXB0 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
MKS1Q9NXB0 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MKS1Q9NXB0 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.61■■□□□ 1.05
MKS1Q9NXB0 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MKS1Q9NXB0 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.6■■□□□ 1.05
MKS1Q9NXB0 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms