Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.65■■□□□ 1.38
SIX2Q9NPC8 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC23.65■■□□□ 1.38
SIX2Q9NPC8 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
SIX2Q9NPC8 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SIX2Q9NPC8 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SIX2Q9NPC8 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SIX2Q9NPC8 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
SIX2Q9NPC8 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SIX2Q9NPC8 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SIX2Q9NPC8 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
SIX2Q9NPC8 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC23.64■■□□□ 1.38
SIX2Q9NPC8 AC133637.1-201ENST00000624115 1537 ntBASIC23.64■■□□□ 1.38
SIX2Q9NPC8 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC23.64■■□□□ 1.38
SIX2Q9NPC8 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
SIX2Q9NPC8 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SIX2Q9NPC8 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SIX2Q9NPC8 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SIX2Q9NPC8 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
SIX2Q9NPC8 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SIX2Q9NPC8 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
SIX2Q9NPC8 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC23.64■■□□□ 1.37
SIX2Q9NPC8 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
SIX2Q9NPC8 MIR4466-201ENST00000606121 54 ntBASIC23.64■■□□□ 1.37
SIX2Q9NPC8 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
SIX2Q9NPC8 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
SIX2Q9NPC8 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SIX2Q9NPC8 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SIX2Q9NPC8 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC23.63■■□□□ 1.37
SIX2Q9NPC8 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SIX2Q9NPC8 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC23.63■■□□□ 1.37
SIX2Q9NPC8 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC23.63■■□□□ 1.37
SIX2Q9NPC8 MIR3181-201ENST00000578512 73 ntBASIC23.63■■□□□ 1.37
SIX2Q9NPC8 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC23.63■■□□□ 1.37
SIX2Q9NPC8 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23.63■■□□□ 1.37
SIX2Q9NPC8 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
SIX2Q9NPC8 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 C11orf96-202ENST00000528572 1834 ntBASIC23.62■■□□□ 1.37
SIX2Q9NPC8 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SIX2Q9NPC8 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
SIX2Q9NPC8 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC23.61■■□□□ 1.37
SIX2Q9NPC8 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC23.61■■□□□ 1.37
SIX2Q9NPC8 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.61■■□□□ 1.37
SIX2Q9NPC8 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.61■■□□□ 1.37
SIX2Q9NPC8 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC23.61■■□□□ 1.37
SIX2Q9NPC8 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
SIX2Q9NPC8 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
SIX2Q9NPC8 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC23.6■■□□□ 1.37
SIX2Q9NPC8 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
SIX2Q9NPC8 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
SIX2Q9NPC8 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC23.6■■□□□ 1.37
SIX2Q9NPC8 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
SIX2Q9NPC8 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
SIX2Q9NPC8 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC23.6■■□□□ 1.37
SIX2Q9NPC8 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC23.6■■□□□ 1.37
SIX2Q9NPC8 AL031602.1-201ENST00000633169 911 ntBASIC23.6■■□□□ 1.37
SIX2Q9NPC8 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
SIX2Q9NPC8 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SIX2Q9NPC8 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC23.6■■□□□ 1.37
SIX2Q9NPC8 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
SIX2Q9NPC8 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SIX2Q9NPC8 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC23.59■■□□□ 1.37
SIX2Q9NPC8 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
SIX2Q9NPC8 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SIX2Q9NPC8 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC23.59■■□□□ 1.37
SIX2Q9NPC8 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SIX2Q9NPC8 SRD5A1P1-201ENST00000442297 786 ntBASIC23.59■■□□□ 1.37
SIX2Q9NPC8 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
SIX2Q9NPC8 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.59■■□□□ 1.37
SIX2Q9NPC8 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
SIX2Q9NPC8 WWC2-AS2-201ENST00000578387 2183 ntBASIC23.59■■□□□ 1.37
SIX2Q9NPC8 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SIX2Q9NPC8 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SIX2Q9NPC8 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SIX2Q9NPC8 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC23.59■■□□□ 1.37
SIX2Q9NPC8 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
SIX2Q9NPC8 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.58■■□□□ 1.37
SIX2Q9NPC8 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
SIX2Q9NPC8 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
SIX2Q9NPC8 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.58■■□□□ 1.37
SIX2Q9NPC8 CLDN5-201ENST00000403084 2357 ntBASIC23.58■■□□□ 1.37
SIX2Q9NPC8 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
SIX2Q9NPC8 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.58■■□□□ 1.36
SIX2Q9NPC8 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC23.58■■□□□ 1.36
SIX2Q9NPC8 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
SIX2Q9NPC8 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC23.58■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms