Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIME1Q9H400 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.24■□□□□ 0.67
LIME1Q9H400 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIME1Q9H400 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIME1Q9H400 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIME1Q9H400 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.24■□□□□ 0.67
LIME1Q9H400 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.24■□□□□ 0.67
LIME1Q9H400 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIME1Q9H400 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIME1Q9H400 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIME1Q9H400 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIME1Q9H400 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIME1Q9H400 TERF1P2-201ENST00000583350 1212 ntBASIC19.23■□□□□ 0.67
LIME1Q9H400 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIME1Q9H400 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
LIME1Q9H400 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
LIME1Q9H400 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
LIME1Q9H400 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.23■□□□□ 0.67
LIME1Q9H400 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIME1Q9H400 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIME1Q9H400 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIME1Q9H400 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC19.22■□□□□ 0.67
LIME1Q9H400 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
LIME1Q9H400 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
LIME1Q9H400 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
LIME1Q9H400 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIME1Q9H400 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIME1Q9H400 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIME1Q9H400 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIME1Q9H400 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIME1Q9H400 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.22■□□□□ 0.67
LIME1Q9H400 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIME1Q9H400 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIME1Q9H400 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LIME1Q9H400 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.22■□□□□ 0.67
LIME1Q9H400 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
LIME1Q9H400 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIME1Q9H400 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIME1Q9H400 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIME1Q9H400 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIME1Q9H400 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIME1Q9H400 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIME1Q9H400 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
LIME1Q9H400 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIME1Q9H400 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIME1Q9H400 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIME1Q9H400 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIME1Q9H400 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIME1Q9H400 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIME1Q9H400 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIME1Q9H400 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIME1Q9H400 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIME1Q9H400 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LIME1Q9H400 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIME1Q9H400 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.2■□□□□ 0.66
LIME1Q9H400 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.2■□□□□ 0.66
LIME1Q9H400 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.2■□□□□ 0.66
LIME1Q9H400 AC010525.1-201ENST00000585559 441 ntBASIC19.2■□□□□ 0.66
LIME1Q9H400 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.2■□□□□ 0.66
LIME1Q9H400 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIME1Q9H400 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIME1Q9H400 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIME1Q9H400 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIME1Q9H400 LINC02228-203ENST00000641970 1355 ntBASIC19.19■□□□□ 0.66
LIME1Q9H400 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIME1Q9H400 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIME1Q9H400 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.19■□□□□ 0.66
LIME1Q9H400 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.19■□□□□ 0.66
LIME1Q9H400 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIME1Q9H400 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
LIME1Q9H400 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
LIME1Q9H400 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIME1Q9H400 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.19■□□□□ 0.66
LIME1Q9H400 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIME1Q9H400 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIME1Q9H400 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.19■□□□□ 0.66
LIME1Q9H400 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIME1Q9H400 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIME1Q9H400 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIME1Q9H400 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
LIME1Q9H400 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.18■□□□□ 0.66
LIME1Q9H400 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIME1Q9H400 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
LIME1Q9H400 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIME1Q9H400 AC080038.1-201ENST00000611274 1154 ntBASIC19.18■□□□□ 0.66
LIME1Q9H400 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.18■□□□□ 0.66
LIME1Q9H400 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIME1Q9H400 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIME1Q9H400 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIME1Q9H400 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.18■□□□□ 0.66
LIME1Q9H400 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIME1Q9H400 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
LIME1Q9H400 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.18■□□□□ 0.66
LIME1Q9H400 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
LIME1Q9H400 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIME1Q9H400 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIME1Q9H400 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
LIME1Q9H400 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIME1Q9H400 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIME1Q9H400 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms