Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USB1Q9BQ65 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
USB1Q9BQ65 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USB1Q9BQ65 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USB1Q9BQ65 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
USB1Q9BQ65 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.39■□□□□ 0.7
USB1Q9BQ65 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
USB1Q9BQ65 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.39■□□□□ 0.69
USB1Q9BQ65 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.39■□□□□ 0.69
USB1Q9BQ65 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
USB1Q9BQ65 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.39■□□□□ 0.69
USB1Q9BQ65 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.39■□□□□ 0.69
USB1Q9BQ65 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
USB1Q9BQ65 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
USB1Q9BQ65 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USB1Q9BQ65 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.39■□□□□ 0.69
USB1Q9BQ65 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
USB1Q9BQ65 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USB1Q9BQ65 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USB1Q9BQ65 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USB1Q9BQ65 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USB1Q9BQ65 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USB1Q9BQ65 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.38■□□□□ 0.69
USB1Q9BQ65 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USB1Q9BQ65 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USB1Q9BQ65 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.38■□□□□ 0.69
USB1Q9BQ65 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.38■□□□□ 0.69
USB1Q9BQ65 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
USB1Q9BQ65 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USB1Q9BQ65 SLC47A1P1-202ENST00000449666 945 ntBASIC19.38■□□□□ 0.69
USB1Q9BQ65 IGHV3-19-201ENST00000521488 291 ntBASIC19.38■□□□□ 0.69
USB1Q9BQ65 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.38■□□□□ 0.69
USB1Q9BQ65 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.38■□□□□ 0.69
USB1Q9BQ65 AC004812.2-201ENST00000611079 2094 ntBASIC19.37■□□□□ 0.69
USB1Q9BQ65 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
USB1Q9BQ65 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USB1Q9BQ65 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
USB1Q9BQ65 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USB1Q9BQ65 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USB1Q9BQ65 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USB1Q9BQ65 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USB1Q9BQ65 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USB1Q9BQ65 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
USB1Q9BQ65 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
USB1Q9BQ65 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
USB1Q9BQ65 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
USB1Q9BQ65 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USB1Q9BQ65 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.37■□□□□ 0.69
USB1Q9BQ65 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
USB1Q9BQ65 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USB1Q9BQ65 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.37■□□□□ 0.69
USB1Q9BQ65 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
USB1Q9BQ65 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USB1Q9BQ65 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
USB1Q9BQ65 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.36■□□□□ 0.69
USB1Q9BQ65 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USB1Q9BQ65 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
USB1Q9BQ65 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
USB1Q9BQ65 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC19.36■□□□□ 0.69
USB1Q9BQ65 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USB1Q9BQ65 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
USB1Q9BQ65 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USB1Q9BQ65 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.36■□□□□ 0.69
USB1Q9BQ65 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.36■□□□□ 0.69
USB1Q9BQ65 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USB1Q9BQ65 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USB1Q9BQ65 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
USB1Q9BQ65 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.36■□□□□ 0.69
USB1Q9BQ65 RARRES2P6-201ENST00000567333 442 ntBASIC19.36■□□□□ 0.69
USB1Q9BQ65 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.36■□□□□ 0.69
USB1Q9BQ65 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
USB1Q9BQ65 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
USB1Q9BQ65 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USB1Q9BQ65 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.35■□□□□ 0.69
USB1Q9BQ65 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USB1Q9BQ65 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USB1Q9BQ65 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USB1Q9BQ65 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.35■□□□□ 0.69
USB1Q9BQ65 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.35■□□□□ 0.69
USB1Q9BQ65 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.35■□□□□ 0.69
USB1Q9BQ65 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
USB1Q9BQ65 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USB1Q9BQ65 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USB1Q9BQ65 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
USB1Q9BQ65 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
USB1Q9BQ65 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
USB1Q9BQ65 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
USB1Q9BQ65 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USB1Q9BQ65 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
USB1Q9BQ65 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
USB1Q9BQ65 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
USB1Q9BQ65 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USB1Q9BQ65 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.34■□□□□ 0.69
USB1Q9BQ65 MIR5787-201ENST00000611784 55 ntBASIC19.34■□□□□ 0.69
USB1Q9BQ65 AL358852.1-201ENST00000623174 1268 ntBASIC19.34■□□□□ 0.69
USB1Q9BQ65 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
USB1Q9BQ65 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
USB1Q9BQ65 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USB1Q9BQ65 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USB1Q9BQ65 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms