Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LINC00477Q96M19 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
LINC00477Q96M19 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
LINC00477Q96M19 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LINC00477Q96M19 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC16.38■□□□□ 0.21
LINC00477Q96M19 AC009102.2-201ENST00000606772 1639 ntBASIC16.38■□□□□ 0.21
LINC00477Q96M19 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LINC00477Q96M19 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LINC00477Q96M19 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
LINC00477Q96M19 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC16.38■□□□□ 0.21
LINC00477Q96M19 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LINC00477Q96M19 MIR4787-201ENST00000607364 84 ntBASIC16.38■□□□□ 0.21
LINC00477Q96M19 NKILA-201ENST00000613231 537 ntTSL 4 BASIC16.38■□□□□ 0.21
LINC00477Q96M19 EXOG-217ENST00000630638 197 ntTSL 5 BASIC16.38■□□□□ 0.21
LINC00477Q96M19 MYB-221ENST00000527615 2381 ntTSL 5 BASIC16.38■□□□□ 0.21
LINC00477Q96M19 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC16.38■□□□□ 0.21
LINC00477Q96M19 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC16.38■□□□□ 0.21
LINC00477Q96M19 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LINC00477Q96M19 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LINC00477Q96M19 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LINC00477Q96M19 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LINC00477Q96M19 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LINC00477Q96M19 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LINC00477Q96M19 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LINC00477Q96M19 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LINC00477Q96M19 WWC2-AS2-201ENST00000578387 2183 ntBASIC16.37■□□□□ 0.21
LINC00477Q96M19 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC16.37■□□□□ 0.21
LINC00477Q96M19 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC16.37■□□□□ 0.21
LINC00477Q96M19 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
LINC00477Q96M19 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LINC00477Q96M19 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LINC00477Q96M19 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC16.37■□□□□ 0.21
LINC00477Q96M19 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC16.37■□□□□ 0.21
LINC00477Q96M19 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC16.37■□□□□ 0.21
LINC00477Q96M19 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC16.37■□□□□ 0.21
LINC00477Q96M19 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LINC00477Q96M19 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
LINC00477Q96M19 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LINC00477Q96M19 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC16.36■□□□□ 0.21
LINC00477Q96M19 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LINC00477Q96M19 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LINC00477Q96M19 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LINC00477Q96M19 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LINC00477Q96M19 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LINC00477Q96M19 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LINC00477Q96M19 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC16.36■□□□□ 0.21
LINC00477Q96M19 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC16.36■□□□□ 0.21
LINC00477Q96M19 TFPT-201ENST00000391757 774 ntTSL 5 BASIC16.36■□□□□ 0.21
LINC00477Q96M19 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LINC00477Q96M19 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
LINC00477Q96M19 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC16.36■□□□□ 0.21
LINC00477Q96M19 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LINC00477Q96M19 AC010997.5-201ENST00000609182 354 ntBASIC16.36■□□□□ 0.21
LINC00477Q96M19 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
LINC00477Q96M19 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC16.36■□□□□ 0.21
LINC00477Q96M19 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
LINC00477Q96M19 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LINC00477Q96M19 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
LINC00477Q96M19 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC16.35■□□□□ 0.21
LINC00477Q96M19 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LINC00477Q96M19 CD72-202ENST00000378430 585 ntTSL 3 BASIC16.35■□□□□ 0.21
LINC00477Q96M19 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LINC00477Q96M19 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC16.35■□□□□ 0.21
LINC00477Q96M19 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC16.35■□□□□ 0.21
LINC00477Q96M19 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LINC00477Q96M19 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LINC00477Q96M19 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LINC00477Q96M19 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LINC00477Q96M19 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LINC00477Q96M19 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LINC00477Q96M19 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC16.34■□□□□ 0.21
LINC00477Q96M19 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
LINC00477Q96M19 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC16.34■□□□□ 0.21
LINC00477Q96M19 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC16.34■□□□□ 0.21
LINC00477Q96M19 HES6-204ENST00000409182 863 ntTSL 2 BASIC16.34■□□□□ 0.21
LINC00477Q96M19 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LINC00477Q96M19 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LINC00477Q96M19 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LINC00477Q96M19 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LINC00477Q96M19 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LINC00477Q96M19 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LINC00477Q96M19 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC16.34■□□□□ 0.21
LINC00477Q96M19 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LINC00477Q96M19 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LINC00477Q96M19 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC16.34■□□□□ 0.21
LINC00477Q96M19 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LINC00477Q96M19 AC004687.1-201ENST00000579003 1625 ntBASIC16.34■□□□□ 0.21
LINC00477Q96M19 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC16.34■□□□□ 0.21
LINC00477Q96M19 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC16.33■□□□□ 0.21
LINC00477Q96M19 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
LINC00477Q96M19 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC16.33■□□□□ 0.21
LINC00477Q96M19 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
LINC00477Q96M19 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LINC00477Q96M19 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LINC00477Q96M19 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LINC00477Q96M19 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LINC00477Q96M19 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC16.33■□□□□ 0.2
LINC00477Q96M19 AC239859.2-201ENST00000444165 318 ntBASIC16.33■□□□□ 0.2
LINC00477Q96M19 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LINC00477Q96M19 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms