Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VRK3Q8IV63 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VRK3Q8IV63 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
VRK3Q8IV63 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
VRK3Q8IV63 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VRK3Q8IV63 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VRK3Q8IV63 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
VRK3Q8IV63 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.47■■□□□ 1.03
VRK3Q8IV63 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.47■■□□□ 1.03
VRK3Q8IV63 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.47■■□□□ 1.03
VRK3Q8IV63 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VRK3Q8IV63 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.47■■□□□ 1.03
VRK3Q8IV63 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VRK3Q8IV63 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VRK3Q8IV63 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VRK3Q8IV63 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.46■■□□□ 1.03
VRK3Q8IV63 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
VRK3Q8IV63 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VRK3Q8IV63 ESRRAP2-201ENST00000418437 1549 ntBASIC21.46■■□□□ 1.03
VRK3Q8IV63 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VRK3Q8IV63 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.46■■□□□ 1.03
VRK3Q8IV63 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
VRK3Q8IV63 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VRK3Q8IV63 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VRK3Q8IV63 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VRK3Q8IV63 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
VRK3Q8IV63 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
VRK3Q8IV63 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
VRK3Q8IV63 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.45■■□□□ 1.02
VRK3Q8IV63 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
VRK3Q8IV63 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.45■■□□□ 1.02
VRK3Q8IV63 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VRK3Q8IV63 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VRK3Q8IV63 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
VRK3Q8IV63 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VRK3Q8IV63 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VRK3Q8IV63 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VRK3Q8IV63 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VRK3Q8IV63 BX842568.3-201ENST00000418104 571 ntBASIC21.44■■□□□ 1.02
VRK3Q8IV63 AP001330.3-201ENST00000520123 633 ntBASIC21.44■■□□□ 1.02
VRK3Q8IV63 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
VRK3Q8IV63 AC008764.7-201ENST00000593779 1081 ntBASIC21.44■■□□□ 1.02
VRK3Q8IV63 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.44■■□□□ 1.02
VRK3Q8IV63 AC080038.3-201ENST00000623346 1952 ntBASIC21.44■■□□□ 1.02
VRK3Q8IV63 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
VRK3Q8IV63 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.44■■□□□ 1.02
VRK3Q8IV63 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
VRK3Q8IV63 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
VRK3Q8IV63 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
VRK3Q8IV63 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VRK3Q8IV63 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VRK3Q8IV63 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
VRK3Q8IV63 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
VRK3Q8IV63 EDA-201ENST00000338901 1233 ntBASIC21.43■■□□□ 1.02
VRK3Q8IV63 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VRK3Q8IV63 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VRK3Q8IV63 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VRK3Q8IV63 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.43■■□□□ 1.02
VRK3Q8IV63 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.43■■□□□ 1.02
VRK3Q8IV63 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
VRK3Q8IV63 AC127496.7-201ENST00000625110 1798 ntBASIC21.43■■□□□ 1.02
VRK3Q8IV63 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
VRK3Q8IV63 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.43■■□□□ 1.02
VRK3Q8IV63 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VRK3Q8IV63 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
VRK3Q8IV63 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
VRK3Q8IV63 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VRK3Q8IV63 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VRK3Q8IV63 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VRK3Q8IV63 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VRK3Q8IV63 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.42■■□□□ 1.02
VRK3Q8IV63 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.42■■□□□ 1.02
VRK3Q8IV63 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.42■■□□□ 1.02
VRK3Q8IV63 GUSBP5-202ENST00000510805 1989 ntBASIC21.42■■□□□ 1.02
VRK3Q8IV63 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
VRK3Q8IV63 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.42■■□□□ 1.02
VRK3Q8IV63 AC233992.3-201ENST00000607491 485 ntBASIC21.42■■□□□ 1.02
VRK3Q8IV63 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.42■■□□□ 1.02
VRK3Q8IV63 AL355001.2-201ENST00000620617 1191 ntBASIC21.42■■□□□ 1.02
VRK3Q8IV63 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VRK3Q8IV63 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VRK3Q8IV63 AC137767.1-201ENST00000602918 1920 ntBASIC21.41■■□□□ 1.02
VRK3Q8IV63 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
VRK3Q8IV63 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
VRK3Q8IV63 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.41■■□□□ 1.02
VRK3Q8IV63 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
VRK3Q8IV63 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VRK3Q8IV63 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
VRK3Q8IV63 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VRK3Q8IV63 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
VRK3Q8IV63 MIR638-201ENST00000385237 100 ntBASIC21.41■■□□□ 1.02
VRK3Q8IV63 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.41■■□□□ 1.02
VRK3Q8IV63 SUDS3P1-201ENST00000505831 966 ntBASIC21.41■■□□□ 1.02
VRK3Q8IV63 AF213884.3-201ENST00000563833 479 ntBASIC21.41■■□□□ 1.02
VRK3Q8IV63 AC133561.4-201ENST00000566112 224 ntBASIC21.41■■□□□ 1.02
VRK3Q8IV63 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.41■■□□□ 1.02
VRK3Q8IV63 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.41■■□□□ 1.02
VRK3Q8IV63 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
VRK3Q8IV63 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
VRK3Q8IV63 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms