Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC25.81■■□□□ 1.72
SHROOM1Q2M3G4 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC25.81■■□□□ 1.72
SHROOM1Q2M3G4 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
SHROOM1Q2M3G4 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC25.8■■□□□ 1.72
SHROOM1Q2M3G4 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SHROOM1Q2M3G4 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC25.8■■□□□ 1.72
SHROOM1Q2M3G4 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC25.8■■□□□ 1.72
SHROOM1Q2M3G4 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC25.8■■□□□ 1.72
SHROOM1Q2M3G4 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
SHROOM1Q2M3G4 ANOS2P-203ENST00000472227 1816 ntBASIC25.79■■□□□ 1.72
SHROOM1Q2M3G4 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
SHROOM1Q2M3G4 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC25.79■■□□□ 1.72
SHROOM1Q2M3G4 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
SHROOM1Q2M3G4 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
SHROOM1Q2M3G4 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SHROOM1Q2M3G4 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC25.79■■□□□ 1.72
SHROOM1Q2M3G4 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
SHROOM1Q2M3G4 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC25.78■■□□□ 1.72
SHROOM1Q2M3G4 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SHROOM1Q2M3G4 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SHROOM1Q2M3G4 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SHROOM1Q2M3G4 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SHROOM1Q2M3G4 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC25.78■■□□□ 1.72
SHROOM1Q2M3G4 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC25.78■■□□□ 1.72
SHROOM1Q2M3G4 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SHROOM1Q2M3G4 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC25.78■■□□□ 1.72
SHROOM1Q2M3G4 AC004854.2-201ENST00000608450 1441 ntBASIC25.78■■□□□ 1.72
SHROOM1Q2M3G4 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC25.77■■□□□ 1.72
SHROOM1Q2M3G4 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC25.77■■□□□ 1.72
SHROOM1Q2M3G4 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC25.77■■□□□ 1.72
SHROOM1Q2M3G4 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC25.77■■□□□ 1.72
SHROOM1Q2M3G4 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC25.77■■□□□ 1.72
SHROOM1Q2M3G4 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC25.77■■□□□ 1.72
SHROOM1Q2M3G4 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SHROOM1Q2M3G4 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC25.76■■□□□ 1.71
SHROOM1Q2M3G4 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC25.76■■□□□ 1.71
SHROOM1Q2M3G4 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC25.76■■□□□ 1.71
SHROOM1Q2M3G4 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
SHROOM1Q2M3G4 VPS53-216ENST00000574029 585 ntTSL 4 BASIC25.76■■□□□ 1.71
SHROOM1Q2M3G4 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC25.76■■□□□ 1.71
SHROOM1Q2M3G4 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
SHROOM1Q2M3G4 DUSP8P3-201ENST00000399571 1760 ntBASIC25.75■■□□□ 1.71
SHROOM1Q2M3G4 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SHROOM1Q2M3G4 AP004607.4-201ENST00000530158 1459 ntBASIC25.75■■□□□ 1.71
SHROOM1Q2M3G4 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
SHROOM1Q2M3G4 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC25.75■■□□□ 1.71
SHROOM1Q2M3G4 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SHROOM1Q2M3G4 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
SHROOM1Q2M3G4 AC010141.3-201ENST00000456659 717 ntBASIC25.75■■□□□ 1.71
SHROOM1Q2M3G4 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC25.75■■□□□ 1.71
SHROOM1Q2M3G4 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SHROOM1Q2M3G4 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
SHROOM1Q2M3G4 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC25.75■■□□□ 1.71
SHROOM1Q2M3G4 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
SHROOM1Q2M3G4 BX005040.4-201ENST00000637145 1518 ntBASIC25.74■■□□□ 1.71
SHROOM1Q2M3G4 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
SHROOM1Q2M3G4 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
SHROOM1Q2M3G4 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
SHROOM1Q2M3G4 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC25.74■■□□□ 1.71
SHROOM1Q2M3G4 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
SHROOM1Q2M3G4 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC25.74■■□□□ 1.71
SHROOM1Q2M3G4 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC25.74■■□□□ 1.71
SHROOM1Q2M3G4 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC25.74■■□□□ 1.71
SHROOM1Q2M3G4 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
SHROOM1Q2M3G4 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SHROOM1Q2M3G4 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SHROOM1Q2M3G4 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC25.73■■□□□ 1.71
SHROOM1Q2M3G4 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC25.73■■□□□ 1.71
SHROOM1Q2M3G4 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC25.73■■□□□ 1.71
SHROOM1Q2M3G4 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC25.72■■□□□ 1.71
SHROOM1Q2M3G4 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SHROOM1Q2M3G4 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC25.72■■□□□ 1.71
SHROOM1Q2M3G4 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC25.72■■□□□ 1.71
SHROOM1Q2M3G4 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SHROOM1Q2M3G4 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC25.72■■□□□ 1.71
SHROOM1Q2M3G4 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SHROOM1Q2M3G4 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC25.72■■□□□ 1.71
SHROOM1Q2M3G4 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SHROOM1Q2M3G4 USP45-205ENST00000472914 1617 ntTSL 5 BASIC25.72■■□□□ 1.71
SHROOM1Q2M3G4 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC25.72■■□□□ 1.71
SHROOM1Q2M3G4 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SHROOM1Q2M3G4 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC25.72■■□□□ 1.71
SHROOM1Q2M3G4 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC25.72■■□□□ 1.71
SHROOM1Q2M3G4 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC25.72■■□□□ 1.71
SHROOM1Q2M3G4 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
SHROOM1Q2M3G4 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC25.71■■□□□ 1.71
SHROOM1Q2M3G4 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC25.71■■□□□ 1.71
SHROOM1Q2M3G4 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC25.71■■□□□ 1.71
SHROOM1Q2M3G4 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
SHROOM1Q2M3G4 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
SHROOM1Q2M3G4 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC25.7■■□□□ 1.7
SHROOM1Q2M3G4 COX20-201ENST00000366528 568 ntTSL 2 BASIC25.7■■□□□ 1.7
SHROOM1Q2M3G4 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SHROOM1Q2M3G4 GALNS-213ENST00000569433 723 ntTSL 3 BASIC25.7■■□□□ 1.7
SHROOM1Q2M3G4 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SHROOM1Q2M3G4 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SHROOM1Q2M3G4 ASL-203ENST00000380839 1765 ntTSL 5 BASIC25.69■■□□□ 1.7
SHROOM1Q2M3G4 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SHROOM1Q2M3G4 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC25.69■■□□□ 1.7
SHROOM1Q2M3G4 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms