Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.61■□□□□ 0.73
H3F3AP84243 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
H3F3AP84243 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.61■□□□□ 0.73
H3F3AP84243 AC233992.3-201ENST00000607491 485 ntBASIC19.61■□□□□ 0.73
H3F3AP84243 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.61■□□□□ 0.73
H3F3AP84243 AC068587.7-201ENST00000641602 218 ntBASIC19.61■□□□□ 0.73
H3F3AP84243 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
H3F3AP84243 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
H3F3AP84243 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
H3F3AP84243 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
H3F3AP84243 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC19.6■□□□□ 0.73
H3F3AP84243 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
H3F3AP84243 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
H3F3AP84243 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
H3F3AP84243 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.6■□□□□ 0.73
H3F3AP84243 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.6■□□□□ 0.73
H3F3AP84243 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
H3F3AP84243 SUDS3P1-201ENST00000505831 966 ntBASIC19.6■□□□□ 0.73
H3F3AP84243 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
H3F3AP84243 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
H3F3AP84243 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
H3F3AP84243 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
H3F3AP84243 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
H3F3AP84243 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.59■□□□□ 0.73
H3F3AP84243 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
H3F3AP84243 AP001330.3-201ENST00000520123 633 ntBASIC19.59■□□□□ 0.73
H3F3AP84243 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.59■□□□□ 0.73
H3F3AP84243 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
H3F3AP84243 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.59■□□□□ 0.73
H3F3AP84243 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
H3F3AP84243 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
H3F3AP84243 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
H3F3AP84243 AC133561.1-201ENST00000568600 2415 ntBASIC19.59■□□□□ 0.73
H3F3AP84243 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
H3F3AP84243 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
H3F3AP84243 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
H3F3AP84243 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
H3F3AP84243 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.58■□□□□ 0.73
H3F3AP84243 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.58■□□□□ 0.73
H3F3AP84243 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
H3F3AP84243 MIR638-201ENST00000385237 100 ntBASIC19.58■□□□□ 0.72
H3F3AP84243 MIR939-201ENST00000401314 82 ntBASIC19.58■□□□□ 0.72
H3F3AP84243 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
H3F3AP84243 AP005435.1-201ENST00000529293 1178 ntBASIC19.58■□□□□ 0.72
H3F3AP84243 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
H3F3AP84243 CA15P2-201ENST00000611168 834 ntBASIC19.58■□□□□ 0.72
H3F3AP84243 AL136967.2-201ENST00000623968 743 ntBASIC19.58■□□□□ 0.72
H3F3AP84243 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.58■□□□□ 0.72
H3F3AP84243 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
H3F3AP84243 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
H3F3AP84243 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.58■□□□□ 0.72
H3F3AP84243 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.58■□□□□ 0.72
H3F3AP84243 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
H3F3AP84243 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
H3F3AP84243 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
H3F3AP84243 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.57■□□□□ 0.72
H3F3AP84243 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
H3F3AP84243 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
H3F3AP84243 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.57■□□□□ 0.72
H3F3AP84243 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.57■□□□□ 0.72
H3F3AP84243 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
H3F3AP84243 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
H3F3AP84243 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
H3F3AP84243 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.57■□□□□ 0.72
H3F3AP84243 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.57■□□□□ 0.72
H3F3AP84243 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
H3F3AP84243 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
H3F3AP84243 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
H3F3AP84243 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
H3F3AP84243 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
H3F3AP84243 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
H3F3AP84243 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
H3F3AP84243 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
H3F3AP84243 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
H3F3AP84243 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
H3F3AP84243 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
H3F3AP84243 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
H3F3AP84243 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.56■□□□□ 0.72
H3F3AP84243 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.56■□□□□ 0.72
H3F3AP84243 AC027682.1-201ENST00000562846 899 ntBASIC19.56■□□□□ 0.72
H3F3AP84243 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
H3F3AP84243 AC005837.3-201ENST00000612163 286 ntBASIC19.56■□□□□ 0.72
H3F3AP84243 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.56■□□□□ 0.72
H3F3AP84243 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
H3F3AP84243 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
H3F3AP84243 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
H3F3AP84243 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
H3F3AP84243 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
H3F3AP84243 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
H3F3AP84243 AC127496.7-201ENST00000625110 1798 ntBASIC19.55■□□□□ 0.72
H3F3AP84243 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
H3F3AP84243 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
H3F3AP84243 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
H3F3AP84243 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
H3F3AP84243 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.55■□□□□ 0.72
H3F3AP84243 AC008764.7-201ENST00000593779 1081 ntBASIC19.55■□□□□ 0.72
H3F3AP84243 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.55■□□□□ 0.72
H3F3AP84243 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
H3F3AP84243 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
H3F3AP84243 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms