Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CTCFP49711 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CTCFP49711 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
CTCFP49711 AC128676.1-201ENST00000454392 318 ntBASIC25.61■■□□□ 1.69
CTCFP49711 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC25.61■■□□□ 1.69
CTCFP49711 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CTCFP49711 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC25.61■■□□□ 1.69
CTCFP49711 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
CTCFP49711 CPT2-209ENST00000636935 803 ntTSL 5 BASIC25.61■■□□□ 1.69
CTCFP49711 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CTCFP49711 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC25.6■■□□□ 1.69
CTCFP49711 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
CTCFP49711 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CTCFP49711 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC25.6■■□□□ 1.69
CTCFP49711 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC25.59■■□□□ 1.69
CTCFP49711 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CTCFP49711 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC25.59■■□□□ 1.69
CTCFP49711 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC25.59■■□□□ 1.69
CTCFP49711 MMD2-204ENST00000612910 778 ntTSL 5 BASIC25.59■■□□□ 1.69
CTCFP49711 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.59■■□□□ 1.69
CTCFP49711 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CTCFP49711 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.59■■□□□ 1.69
CTCFP49711 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC25.59■■□□□ 1.69
CTCFP49711 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CTCFP49711 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
CTCFP49711 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.69
CTCFP49711 MIPEPP3-201ENST00000412105 444 ntBASIC25.58■■□□□ 1.69
CTCFP49711 KRT18P21-201ENST00000515767 1272 ntBASIC25.58■■□□□ 1.69
CTCFP49711 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC25.58■■□□□ 1.69
CTCFP49711 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
CTCFP49711 PHB2-213ENST00000546111 858 ntTSL 2 BASIC25.58■■□□□ 1.69
CTCFP49711 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC25.58■■□□□ 1.69
CTCFP49711 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC25.58■■□□□ 1.69
CTCFP49711 UBE2DNL-204ENST00000602536 740 ntBASIC25.58■■□□□ 1.69
CTCFP49711 LINC01023-201ENST00000606054 436 ntBASIC25.58■■□□□ 1.69
CTCFP49711 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
CTCFP49711 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CTCFP49711 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CTCFP49711 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
CTCFP49711 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC25.57■■□□□ 1.68
CTCFP49711 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC25.57■■□□□ 1.68
CTCFP49711 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC25.57■■□□□ 1.68
CTCFP49711 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC25.57■■□□□ 1.68
CTCFP49711 REXO1L12P-201ENST00000622156 912 ntBASIC25.57■■□□□ 1.68
CTCFP49711 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CTCFP49711 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
CTCFP49711 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CTCFP49711 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
CTCFP49711 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CTCFP49711 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC25.56■■□□□ 1.68
CTCFP49711 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC25.56■■□□□ 1.68
CTCFP49711 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC25.56■■□□□ 1.68
CTCFP49711 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC25.55■■□□□ 1.68
CTCFP49711 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
CTCFP49711 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
CTCFP49711 BRI3-207ENST00000539286 699 ntTSL 2 BASIC25.55■■□□□ 1.68
CTCFP49711 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC25.55■■□□□ 1.68
CTCFP49711 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
CTCFP49711 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CTCFP49711 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CTCFP49711 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
CTCFP49711 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
CTCFP49711 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC25.55■■□□□ 1.68
CTCFP49711 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC25.55■■□□□ 1.68
CTCFP49711 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CTCFP49711 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CTCFP49711 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC25.54■■□□□ 1.68
CTCFP49711 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC25.54■■□□□ 1.68
CTCFP49711 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC25.54■■□□□ 1.68
CTCFP49711 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC25.54■■□□□ 1.68
CTCFP49711 CNN2P6-201ENST00000439038 900 ntBASIC25.54■■□□□ 1.68
CTCFP49711 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC25.54■■□□□ 1.68
CTCFP49711 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC25.54■■□□□ 1.68
CTCFP49711 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC25.54■■□□□ 1.68
CTCFP49711 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
CTCFP49711 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
CTCFP49711 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC25.54■■□□□ 1.68
CTCFP49711 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
CTCFP49711 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CTCFP49711 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
CTCFP49711 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.53■■□□□ 1.68
CTCFP49711 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
CTCFP49711 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
CTCFP49711 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC25.53■■□□□ 1.68
CTCFP49711 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
CTCFP49711 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC25.53■■□□□ 1.68
CTCFP49711 APTR-203ENST00000430801 583 ntTSL 5 BASIC25.53■■□□□ 1.68
CTCFP49711 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC25.53■■□□□ 1.68
CTCFP49711 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC25.53■■□□□ 1.68
CTCFP49711 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC25.53■■□□□ 1.68
CTCFP49711 MYCNOS-205ENST00000641950 531 ntBASIC25.53■■□□□ 1.68
CTCFP49711 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.53■■□□□ 1.68
CTCFP49711 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
CTCFP49711 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
CTCFP49711 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
CTCFP49711 UBE2SP1-201ENST00000450587 669 ntBASIC25.52■■□□□ 1.68
CTCFP49711 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC25.52■■□□□ 1.68
CTCFP49711 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CTCFP49711 MMAB-206ENST00000540016 945 ntTSL 3 BASIC25.52■■□□□ 1.68
CTCFP49711 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms