Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
SOX2P48431 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.22■□□□□ 0.67
SOX2P48431 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.22■□□□□ 0.67
SOX2P48431 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.22■□□□□ 0.67
SOX2P48431 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.22■□□□□ 0.67
SOX2P48431 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SOX2P48431 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
SOX2P48431 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX2P48431 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX2P48431 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX2P48431 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX2P48431 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX2P48431 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX2P48431 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.21■□□□□ 0.67
SOX2P48431 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.21■□□□□ 0.67
SOX2P48431 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX2P48431 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX2P48431 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.21■□□□□ 0.67
SOX2P48431 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.21■□□□□ 0.67
SOX2P48431 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SOX2P48431 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.21■□□□□ 0.67
SOX2P48431 LINC01529-204ENST00000636474 1715 ntBASIC19.21■□□□□ 0.67
SOX2P48431 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX2P48431 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX2P48431 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.21■□□□□ 0.67
SOX2P48431 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX2P48431 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX2P48431 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX2P48431 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX2P48431 MIR4508-201ENST00000584178 70 ntBASIC19.2■□□□□ 0.66
SOX2P48431 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.2■□□□□ 0.66
SOX2P48431 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SOX2P48431 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX2P48431 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SOX2P48431 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SOX2P48431 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX2P48431 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX2P48431 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SOX2P48431 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX2P48431 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX2P48431 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX2P48431 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SOX2P48431 KRT8P33-201ENST00000508125 1423 ntBASIC19.19■□□□□ 0.66
SOX2P48431 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX2P48431 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX2P48431 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SOX2P48431 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.19■□□□□ 0.66
SOX2P48431 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX2P48431 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.19■□□□□ 0.66
SOX2P48431 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.19■□□□□ 0.66
SOX2P48431 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX2P48431 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SOX2P48431 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX2P48431 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.19■□□□□ 0.66
SOX2P48431 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SOX2P48431 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SOX2P48431 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX2P48431 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX2P48431 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX2P48431 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SOX2P48431 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SOX2P48431 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.18■□□□□ 0.66
SOX2P48431 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SOX2P48431 AL024507.2-201ENST00000606070 2574 ntBASIC19.18■□□□□ 0.66
SOX2P48431 LINC01960-201ENST00000563759 1884 ntBASIC19.18■□□□□ 0.66
SOX2P48431 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.18■□□□□ 0.66
SOX2P48431 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX2P48431 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SOX2P48431 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SOX2P48431 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SOX2P48431 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX2P48431 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.17■□□□□ 0.66
SOX2P48431 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SOX2P48431 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX2P48431 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.17■□□□□ 0.66
SOX2P48431 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.17■□□□□ 0.66
SOX2P48431 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SOX2P48431 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.17■□□□□ 0.66
SOX2P48431 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX2P48431 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX2P48431 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX2P48431 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.17■□□□□ 0.66
SOX2P48431 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SOX2P48431 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.16■□□□□ 0.66
SOX2P48431 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.16■□□□□ 0.66
SOX2P48431 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.16■□□□□ 0.66
SOX2P48431 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SOX2P48431 FAM99A-202ENST00000538190 1989 ntBASIC19.16■□□□□ 0.66
SOX2P48431 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.16■□□□□ 0.66
SOX2P48431 AC103834.1-201ENST00000520383 144 ntBASIC19.16■□□□□ 0.66
SOX2P48431 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC19.16■□□□□ 0.66
SOX2P48431 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.16■□□□□ 0.66
SOX2P48431 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SOX2P48431 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SOX2P48431 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX2P48431 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX2P48431 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX2P48431 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.16■□□□□ 0.66
SOX2P48431 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX2P48431 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms