Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HNF4AP41235 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
HNF4AP41235 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
HNF4AP41235 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
HNF4AP41235 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
HNF4AP41235 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.19■□□□□ 0.98
HNF4AP41235 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.19■□□□□ 0.98
HNF4AP41235 pRNA.6-201ENST00000610482 90 ntBASIC21.19■□□□□ 0.98
HNF4AP41235 pRNA.5-201ENST00000612139 90 ntBASIC21.19■□□□□ 0.98
HNF4AP41235 pRNA.11-201ENST00000618423 90 ntBASIC21.19■□□□□ 0.98
HNF4AP41235 pRNA.13-201ENST00000619112 90 ntBASIC21.19■□□□□ 0.98
HNF4AP41235 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
HNF4AP41235 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HNF4AP41235 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
HNF4AP41235 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HNF4AP41235 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HNF4AP41235 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.18■□□□□ 0.98
HNF4AP41235 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.18■□□□□ 0.98
HNF4AP41235 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HNF4AP41235 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
HNF4AP41235 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.18■□□□□ 0.98
HNF4AP41235 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.18■□□□□ 0.98
HNF4AP41235 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.18■□□□□ 0.98
HNF4AP41235 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.18■□□□□ 0.98
HNF4AP41235 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.18■□□□□ 0.98
HNF4AP41235 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HNF4AP41235 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HNF4AP41235 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
HNF4AP41235 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HNF4AP41235 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
HNF4AP41235 LINC00526-201ENST00000581067 1875 ntBASIC21.18■□□□□ 0.98
HNF4AP41235 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HNF4AP41235 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HNF4AP41235 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HNF4AP41235 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HNF4AP41235 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.17■□□□□ 0.98
HNF4AP41235 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HNF4AP41235 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HNF4AP41235 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
HNF4AP41235 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HNF4AP41235 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HNF4AP41235 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HNF4AP41235 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HNF4AP41235 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
HNF4AP41235 SYT6-210ENST00000641643 1587 ntBASIC21.16■□□□□ 0.98
HNF4AP41235 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.16■□□□□ 0.98
HNF4AP41235 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.16■□□□□ 0.98
HNF4AP41235 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
HNF4AP41235 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HNF4AP41235 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HNF4AP41235 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
HNF4AP41235 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
HNF4AP41235 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HNF4AP41235 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HNF4AP41235 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HNF4AP41235 AC133637.1-201ENST00000624115 1537 ntBASIC21.15■□□□□ 0.98
HNF4AP41235 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HNF4AP41235 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HNF4AP41235 MIR3181-201ENST00000578512 73 ntBASIC21.15■□□□□ 0.98
HNF4AP41235 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
HNF4AP41235 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HNF4AP41235 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HNF4AP41235 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HNF4AP41235 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HNF4AP41235 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
HNF4AP41235 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.14■□□□□ 0.98
HNF4AP41235 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HNF4AP41235 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HNF4AP41235 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HNF4AP41235 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
HNF4AP41235 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HNF4AP41235 SERBP1P1-201ENST00000396021 1160 ntBASIC21.14■□□□□ 0.97
HNF4AP41235 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
HNF4AP41235 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.14■□□□□ 0.97
HNF4AP41235 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.14■□□□□ 0.97
HNF4AP41235 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.14■□□□□ 0.97
HNF4AP41235 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
HNF4AP41235 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HNF4AP41235 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HNF4AP41235 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
HNF4AP41235 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HNF4AP41235 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
HNF4AP41235 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HNF4AP41235 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.13■□□□□ 0.97
HNF4AP41235 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
HNF4AP41235 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HNF4AP41235 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HNF4AP41235 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
HNF4AP41235 EP400NL-214ENST00000641289 2402 ntBASIC21.13■□□□□ 0.97
HNF4AP41235 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.13■□□□□ 0.97
HNF4AP41235 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.13■□□□□ 0.97
HNF4AP41235 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.13■□□□□ 0.97
HNF4AP41235 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.13■□□□□ 0.97
HNF4AP41235 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HNF4AP41235 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
HNF4AP41235 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.13■□□□□ 0.97
HNF4AP41235 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HNF4AP41235 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HNF4AP41235 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HNF4AP41235 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms