Protein–RNA interactions for Protein: P35542

SAA4, Serum amyloid A-4 protein, humanhuman

Predictions only

Length 130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SAA4P35542 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SAA4P35542 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC17.74■□□□□ 0.43
SAA4P35542 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC17.74■□□□□ 0.43
SAA4P35542 AC010141.3-201ENST00000456659 717 ntBASIC17.74■□□□□ 0.43
SAA4P35542 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC17.74■□□□□ 0.43
SAA4P35542 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SAA4P35542 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC17.74■□□□□ 0.43
SAA4P35542 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC17.74■□□□□ 0.43
SAA4P35542 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC17.74■□□□□ 0.43
SAA4P35542 MIR5787-201ENST00000611784 55 ntBASIC17.74■□□□□ 0.43
SAA4P35542 AC105233.4-201ENST00000642045 216 ntBASIC17.74■□□□□ 0.43
SAA4P35542 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC17.74■□□□□ 0.43
SAA4P35542 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC17.74■□□□□ 0.43
SAA4P35542 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SAA4P35542 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SAA4P35542 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SAA4P35542 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC17.73■□□□□ 0.43
SAA4P35542 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SAA4P35542 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SAA4P35542 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SAA4P35542 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC17.73■□□□□ 0.43
SAA4P35542 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SAA4P35542 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
SAA4P35542 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SAA4P35542 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
SAA4P35542 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SAA4P35542 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SAA4P35542 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SAA4P35542 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC17.72■□□□□ 0.43
SAA4P35542 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SAA4P35542 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SAA4P35542 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC17.72■□□□□ 0.43
SAA4P35542 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC17.72■□□□□ 0.43
SAA4P35542 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SAA4P35542 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC17.72■□□□□ 0.43
SAA4P35542 YBX1P1-201ENST00000445822 960 ntBASIC17.72■□□□□ 0.43
SAA4P35542 PLD4-205ENST00000553861 667 ntTSL 2 BASIC17.72■□□□□ 0.43
SAA4P35542 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SAA4P35542 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC17.72■□□□□ 0.43
SAA4P35542 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC17.72■□□□□ 0.43
SAA4P35542 USP45-205ENST00000472914 1617 ntTSL 5 BASIC17.72■□□□□ 0.43
SAA4P35542 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC17.72■□□□□ 0.43
SAA4P35542 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC17.72■□□□□ 0.43
SAA4P35542 NFE2L3P1-201ENST00000588207 1959 ntBASIC17.71■□□□□ 0.43
SAA4P35542 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SAA4P35542 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC17.71■□□□□ 0.43
SAA4P35542 AC027612.3-201ENST00000413684 1047 ntBASIC17.71■□□□□ 0.43
SAA4P35542 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SAA4P35542 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC17.71■□□□□ 0.43
SAA4P35542 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC17.71■□□□□ 0.43
SAA4P35542 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC17.71■□□□□ 0.43
SAA4P35542 AC087623.3-201ENST00000607047 1098 ntBASIC17.71■□□□□ 0.43
SAA4P35542 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SAA4P35542 LINC01960-201ENST00000563759 1884 ntBASIC17.71■□□□□ 0.43
SAA4P35542 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SAA4P35542 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC17.7■□□□□ 0.42
SAA4P35542 PKM-204ENST00000449901 2526 ntTSL 2 BASIC17.7■□□□□ 0.42
SAA4P35542 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SAA4P35542 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
SAA4P35542 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SAA4P35542 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SAA4P35542 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SAA4P35542 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC17.7■□□□□ 0.42
SAA4P35542 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC17.7■□□□□ 0.42
SAA4P35542 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.7■□□□□ 0.42
SAA4P35542 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SAA4P35542 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SAA4P35542 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SAA4P35542 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SAA4P35542 MPST-204ENST00000404393 1329 ntTSL 5 BASIC17.7■□□□□ 0.42
SAA4P35542 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.7■□□□□ 0.42
SAA4P35542 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SAA4P35542 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SAA4P35542 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SAA4P35542 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SAA4P35542 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SAA4P35542 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SAA4P35542 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC17.69■□□□□ 0.42
SAA4P35542 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC17.69■□□□□ 0.42
SAA4P35542 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SAA4P35542 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC17.69■□□□□ 0.42
SAA4P35542 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SAA4P35542 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SAA4P35542 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
SAA4P35542 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SAA4P35542 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SAA4P35542 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC17.69■□□□□ 0.42
SAA4P35542 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC17.69■□□□□ 0.42
SAA4P35542 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SAA4P35542 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SAA4P35542 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SAA4P35542 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SAA4P35542 MFF-208ENST00000409616 1247 ntTSL 5 BASIC17.68■□□□□ 0.42
SAA4P35542 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SAA4P35542 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SAA4P35542 ANKRD20A6P-201ENST00000618763 204 ntBASIC17.68■□□□□ 0.42
SAA4P35542 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SAA4P35542 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC17.68■□□□□ 0.42
SAA4P35542 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SAA4P35542 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms