Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
MSH3P20585 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.77■■□□□ 1.07
MSH3P20585 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.07
MSH3P20585 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH3P20585 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
MSH3P20585 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
MSH3P20585 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.76■■□□□ 1.07
MSH3P20585 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
MSH3P20585 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
MSH3P20585 BX842568.3-201ENST00000418104 571 ntBASIC21.76■■□□□ 1.07
MSH3P20585 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.76■■□□□ 1.07
MSH3P20585 SLC47A1P1-202ENST00000449666 945 ntBASIC21.76■■□□□ 1.07
MSH3P20585 AC010525.1-201ENST00000585559 441 ntBASIC21.76■■□□□ 1.07
MSH3P20585 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MSH3P20585 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH3P20585 AL117328.2-201ENST00000624617 1940 ntBASIC21.76■■□□□ 1.07
MSH3P20585 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
MSH3P20585 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
MSH3P20585 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH3P20585 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH3P20585 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH3P20585 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
MSH3P20585 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
MSH3P20585 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH3P20585 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
MSH3P20585 MIR638-201ENST00000385237 100 ntBASIC21.75■■□□□ 1.07
MSH3P20585 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
MSH3P20585 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH3P20585 AC008764.7-201ENST00000593779 1081 ntBASIC21.75■■□□□ 1.07
MSH3P20585 AC233992.3-201ENST00000607491 485 ntBASIC21.75■■□□□ 1.07
MSH3P20585 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH3P20585 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
MSH3P20585 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH3P20585 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
MSH3P20585 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
MSH3P20585 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.74■■□□□ 1.07
MSH3P20585 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
MSH3P20585 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH3P20585 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.74■■□□□ 1.07
MSH3P20585 AC005837.3-201ENST00000612163 286 ntBASIC21.74■■□□□ 1.07
MSH3P20585 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.74■■□□□ 1.07
MSH3P20585 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
MSH3P20585 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH3P20585 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH3P20585 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH3P20585 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.74■■□□□ 1.07
MSH3P20585 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MSH3P20585 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
MSH3P20585 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.73■■□□□ 1.07
MSH3P20585 AC233723.2-201ENST00000623798 2106 ntBASIC21.73■■□□□ 1.07
MSH3P20585 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
MSH3P20585 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH3P20585 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
MSH3P20585 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
MSH3P20585 AC027682.1-201ENST00000562846 899 ntBASIC21.73■■□□□ 1.07
MSH3P20585 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.73■■□□□ 1.07
MSH3P20585 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
MSH3P20585 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH3P20585 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
MSH3P20585 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.72■■□□□ 1.07
MSH3P20585 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.72■■□□□ 1.07
MSH3P20585 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MSH3P20585 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MSH3P20585 AP001330.3-201ENST00000520123 633 ntBASIC21.72■■□□□ 1.07
MSH3P20585 AF213884.3-201ENST00000563833 479 ntBASIC21.72■■□□□ 1.07
MSH3P20585 AC142381.2-201ENST00000566120 298 ntBASIC21.72■■□□□ 1.07
MSH3P20585 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH3P20585 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH3P20585 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MSH3P20585 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH3P20585 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MSH3P20585 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH3P20585 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.71■■□□□ 1.07
MSH3P20585 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
MSH3P20585 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
MSH3P20585 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.71■■□□□ 1.07
MSH3P20585 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH3P20585 AL031432.3-201ENST00000607698 485 ntBASIC21.71■■□□□ 1.07
MSH3P20585 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.71■■□□□ 1.07
MSH3P20585 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH3P20585 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
MSH3P20585 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.7■■□□□ 1.07
MSH3P20585 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
MSH3P20585 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH3P20585 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH3P20585 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH3P20585 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH3P20585 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MSH3P20585 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MSH3P20585 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH3P20585 AC099791.1-201ENST00000416440 715 ntBASIC21.7■■□□□ 1.06
MSH3P20585 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.7■■□□□ 1.06
MSH3P20585 AC126544.1-201ENST00000580842 1059 ntBASIC21.7■■□□□ 1.06
MSH3P20585 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MSH3P20585 LINC01960-201ENST00000563759 1884 ntBASIC21.7■■□□□ 1.06
MSH3P20585 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
MSH3P20585 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH3P20585 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH3P20585 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH3P20585 C1orf229-201ENST00000623686 2258 ntBASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms