Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC29.26■■■□□ 2.27
COL3A1P02461 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC29.26■■■□□ 2.27
COL3A1P02461 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC29.26■■■□□ 2.27
COL3A1P02461 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC29.26■■■□□ 2.27
COL3A1P02461 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
COL3A1P02461 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC29.25■■■□□ 2.27
COL3A1P02461 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
COL3A1P02461 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
COL3A1P02461 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
COL3A1P02461 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC29.24■■■□□ 2.27
COL3A1P02461 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
COL3A1P02461 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
COL3A1P02461 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
COL3A1P02461 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
COL3A1P02461 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC29.24■■■□□ 2.27
COL3A1P02461 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC29.24■■■□□ 2.27
COL3A1P02461 SMUG1P1-201ENST00000590640 811 ntBASIC29.24■■■□□ 2.27
COL3A1P02461 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
COL3A1P02461 USP45-205ENST00000472914 1617 ntTSL 5 BASIC29.24■■■□□ 2.27
COL3A1P02461 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC29.24■■■□□ 2.27
COL3A1P02461 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
COL3A1P02461 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC29.24■■■□□ 2.27
COL3A1P02461 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
COL3A1P02461 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC29.23■■■□□ 2.27
COL3A1P02461 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC29.23■■■□□ 2.27
COL3A1P02461 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
COL3A1P02461 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
COL3A1P02461 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC29.23■■■□□ 2.27
COL3A1P02461 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC29.22■■■□□ 2.27
COL3A1P02461 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
COL3A1P02461 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
COL3A1P02461 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC29.22■■■□□ 2.27
COL3A1P02461 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC29.22■■■□□ 2.27
COL3A1P02461 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC29.22■■■□□ 2.27
COL3A1P02461 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC29.22■■■□□ 2.27
COL3A1P02461 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
COL3A1P02461 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
COL3A1P02461 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC29.21■■■□□ 2.27
COL3A1P02461 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC29.21■■■□□ 2.27
COL3A1P02461 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
COL3A1P02461 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC29.21■■■□□ 2.27
COL3A1P02461 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC29.21■■■□□ 2.27
COL3A1P02461 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC29.21■■■□□ 2.27
COL3A1P02461 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC29.21■■■□□ 2.27
COL3A1P02461 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC29.21■■■□□ 2.27
COL3A1P02461 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
COL3A1P02461 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC29.2■■■□□ 2.27
COL3A1P02461 AC087742.1-201ENST00000575880 1738 ntBASIC29.2■■■□□ 2.27
COL3A1P02461 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC29.2■■■□□ 2.27
COL3A1P02461 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC29.2■■■□□ 2.27
COL3A1P02461 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC29.2■■■□□ 2.27
COL3A1P02461 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
COL3A1P02461 NME4-202ENST00000382940 766 ntTSL 3 BASIC29.2■■■□□ 2.26
COL3A1P02461 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC29.2■■■□□ 2.26
COL3A1P02461 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC29.2■■■□□ 2.26
COL3A1P02461 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC29.2■■■□□ 2.26
COL3A1P02461 DUX4L2-201ENST00000561772 1275 ntBASIC29.2■■■□□ 2.26
COL3A1P02461 RAB43-208ENST00000615093 783 ntTSL 5 BASIC29.2■■■□□ 2.26
COL3A1P02461 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC29.2■■■□□ 2.26
COL3A1P02461 NME4-211ENST00000620944 1193 ntTSL 2 BASIC29.2■■■□□ 2.26
COL3A1P02461 DUX4L6-201ENST00000626483 1275 ntBASIC29.2■■■□□ 2.26
COL3A1P02461 DUX4L1-201ENST00000627662 1275 ntBASIC29.2■■■□□ 2.26
COL3A1P02461 DUX4L8-201ENST00000629013 1275 ntBASIC29.2■■■□□ 2.26
COL3A1P02461 DUX4L3-201ENST00000630187 1275 ntBASIC29.2■■■□□ 2.26
COL3A1P02461 DUX4L7-201ENST00000630678 1275 ntBASIC29.2■■■□□ 2.26
COL3A1P02461 DUX4L5-201ENST00000630834 1275 ntBASIC29.2■■■□□ 2.26
COL3A1P02461 AC105233.4-201ENST00000642045 216 ntBASIC29.2■■■□□ 2.26
COL3A1P02461 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
COL3A1P02461 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
COL3A1P02461 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC29.19■■■□□ 2.26
COL3A1P02461 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC29.19■■■□□ 2.26
COL3A1P02461 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
COL3A1P02461 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC29.18■■■□□ 2.26
COL3A1P02461 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC29.18■■■□□ 2.26
COL3A1P02461 ANKRD20A6P-201ENST00000618763 204 ntBASIC29.18■■■□□ 2.26
COL3A1P02461 AC087239.1-201ENST00000622671 572 ntBASIC29.18■■■□□ 2.26
COL3A1P02461 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
COL3A1P02461 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC29.18■■■□□ 2.26
COL3A1P02461 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
COL3A1P02461 TERF1P2-201ENST00000583350 1212 ntBASIC29.17■■■□□ 2.26
COL3A1P02461 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
COL3A1P02461 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
COL3A1P02461 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
COL3A1P02461 MFF-208ENST00000409616 1247 ntTSL 5 BASIC29.17■■■□□ 2.26
COL3A1P02461 AC123595.1-201ENST00000440769 1046 ntBASIC29.17■■■□□ 2.26
COL3A1P02461 KRT18P61-201ENST00000585825 1298 ntBASIC29.17■■■□□ 2.26
COL3A1P02461 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL3A1P02461 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL3A1P02461 CASK-201ENST00000378154 2494 ntTSL 5 BASIC29.16■■■□□ 2.26
COL3A1P02461 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC29.16■■■□□ 2.26
COL3A1P02461 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL3A1P02461 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
COL3A1P02461 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL3A1P02461 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL3A1P02461 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL3A1P02461 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC29.15■■■□□ 2.26
COL3A1P02461 OXCT2P1-201ENST00000447263 1535 ntBASIC29.15■■■□□ 2.26
COL3A1P02461 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL3A1P02461 COMT-203ENST00000403184 2217 ntTSL 2 BASIC29.15■■■□□ 2.26
COL3A1P02461 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms