| CLDN9 | O95484 | CLN6-201 | ENST00000249806 | 2243 nt | APPRIS P1 TSL 1 (best) BASIC | 21.19 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | ARL13B-205 | ENST00000471138 | 2206 nt | APPRIS P1 TSL 1 (best) BASIC | 21.19 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | GPR143-203 | ENST00000467482 | 1762 nt | APPRIS P1 TSL 1 (best) BASIC | 21.19 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | RNF225-201 | ENST00000601382 | 990 nt | APPRIS P1 BASIC | 21.19 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | BAZ1A-201 | ENST00000358716 | 5920 nt | TSL 1 (best) BASIC | 21.19 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | HIRA-201 | ENST00000263208 | 4053 nt | APPRIS P1 TSL 1 (best) BASIC | 21.19 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | RNF39-202 | ENST00000376751 | 1970 nt | TSL 1 (best) BASIC | 21.19 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | POLD2-218 | ENST00000610533 | 1619 nt | TSL 1 (best) BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | CNTD2-202 | ENST00000430325 | 1817 nt | APPRIS P2 TSL 2 BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | C6orf136-201 | ENST00000293604 | 1978 nt | TSL 1 (best) BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | PTPRM-211 | ENST00000580170 | 5941 nt | APPRIS ALT2 TSL 1 (best) BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | GPR137B-202 | ENST00000366592 | 2042 nt | APPRIS P2 TSL 1 (best) BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | ANKHD1-204 | ENST00000394722 | 2035 nt | TSL 1 (best) BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | GATA2-AS1-201 | ENST00000464242 | 1163 nt | TSL 2 BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | AC019163.1-201 | ENST00000512634 | 610 nt | TSL 2 BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | PABPN1-207 | ENST00000556821 | 1220 nt | TSL 2 BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | AC099791.2-201 | ENST00000605725 | 427 nt | BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | PLEKHJ1-206 | ENST00000587962 | 1311 nt | TSL 2 BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | CASP9-203 | ENST00000375890 | 1351 nt | TSL 2 BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | AC138028.2-201 | ENST00000440406 | 1539 nt | TSL 2 BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | FOXJ1-201 | ENST00000322957 | 2641 nt | APPRIS P1 TSL 1 (best) BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | LEFTY1-201 | ENST00000272134 | 1626 nt | APPRIS P1 TSL 1 (best) BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | KCNQ5-213 | ENST00000629977 | 2830 nt | APPRIS ALT2 TSL 1 (best) BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | AKT1S1-206 | ENST00000391834 | 1849 nt | APPRIS P1 TSL 5 BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | KREMEN2-203 | ENST00000571007 | 1877 nt | TSL 2 BASIC | 21.18 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | MMEL1-206 | ENST00000502556 | 1943 nt | TSL 1 (best) BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | PLEKHA8-208 | ENST00000622102 | 2140 nt | TSL 5 BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | P4HA3-202 | ENST00000427714 | 2248 nt | TSL 2 BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | C19orf68-201 | ENST00000328759 | 2277 nt | APPRIS ALT2 TSL 1 (best) BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | SYNDIG1-201 | ENST00000376862 | 2522 nt | APPRIS P1 TSL 1 (best) BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | ZBTB22-208 | ENST00000431845 | 2651 nt | APPRIS P1 TSL 1 (best) BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | TRAPPC5-202 | ENST00000426877 | 765 nt | APPRIS P1 TSL 2 BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | AC006455.2-201 | ENST00000429931 | 906 nt | BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | UQCR11-202 | ENST00000589880 | 504 nt | APPRIS P1 TSL 3 BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | pRNA.6-201 | ENST00000610482 | 90 nt | BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | pRNA.5-201 | ENST00000612139 | 90 nt | BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | pRNA.11-201 | ENST00000618423 | 90 nt | BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | pRNA.13-201 | ENST00000619112 | 90 nt | BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | RASSF1-AS1-201 | ENST00000629828 | 790 nt | BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | ABHD16B-201 | ENST00000369916 | 1491 nt | APPRIS P1 BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | PLPP1-201 | ENST00000264775 | 1550 nt | APPRIS P4 TSL 1 (best) BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | STK19-202 | ENST00000375333 | 1557 nt | APPRIS P3 TSL 1 (best) BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | RALGPS1-207 | ENST00000394022 | 1672 nt | TSL 2 BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | CDK5-204 | ENST00000485972 | 1758 nt | APPRIS P1 TSL 1 (best) BASIC | 21.17 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | CIDEB-201 | ENST00000258807 | 2294 nt | APPRIS P1 TSL 1 (best) BASIC | 21.16 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | FDFT1-201 | ENST00000220584 | 2176 nt | APPRIS P1 TSL 1 (best) BASIC | 21.16 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | DAZAP1-211 | ENST00000592522 | 2157 nt | APPRIS ALT1 TSL 5 BASIC | 21.16 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | CERS5-201 | ENST00000317551 | 2051 nt | APPRIS P3 TSL 2 BASIC | 21.16 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | AC137767.1-201 | ENST00000602918 | 1920 nt | BASIC | 21.16 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | MESP2-201 | ENST00000341735 | 1552 nt | APPRIS P1 TSL 1 (best) BASIC | 21.16 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | NR2F1-AS1-210 | ENST00000606739 | 1431 nt | TSL 2 BASIC | 21.16 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | P2RX2-205 | ENST00000352418 | 1200 nt | TSL 1 (best) BASIC | 21.16 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | RAB32-201 | ENST00000367495 | 1217 nt | APPRIS P1 TSL 1 (best) BASIC | 21.16 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | AL356441.2-201 | ENST00000443009 | 864 nt | BASIC | 21.16 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | KRAS-204 | ENST00000557334 | 1052 nt | TSL 5 BASIC | 21.16 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | REPIN1-214 | ENST00000489432 | 2058 nt | APPRIS ALT2 TSL 2 BASIC | 21.16 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | HOXA4-201 | ENST00000360046 | 1747 nt | APPRIS P1 TSL 1 (best) BASIC | 21.15 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | AC133637.1-201 | ENST00000624115 | 1537 nt | BASIC | 21.15 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | ANKS6-201 | ENST00000353234 | 7164 nt | APPRIS P1 TSL 1 (best) BASIC | 21.15 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | ZNF584-203 | ENST00000593920 | 2187 nt | TSL 2 BASIC | 21.15 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | MIF-201 | ENST00000215754 | 939 nt | APPRIS P1 TSL 1 (best) BASIC | 21.15 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | ARFIP2-205 | ENST00000525235 | 852 nt | TSL 2 BASIC | 21.15 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | CA15P2-201 | ENST00000611168 | 834 nt | BASIC | 21.15 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | SLC35A3-216 | ENST00000639221 | 1032 nt | TSL 5 BASIC | 21.15 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | PPT2-244 | ENST00000324816 | 2053 nt | APPRIS ALT2 TSL 1 (best) BASIC | 21.15 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | ASAP2-201 | ENST00000281419 | 5712 nt | APPRIS P3 TSL 1 (best) BASIC | 21.15 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | C11orf96-202 | ENST00000528572 | 1834 nt | BASIC | 21.15 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | MYB-221 | ENST00000527615 | 2381 nt | TSL 5 BASIC | 21.15 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | KCNN1-204 | ENST00000615435 | 1691 nt | APPRIS ALT1 TSL 5 BASIC | 21.15 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | EEFSEC-201 | ENST00000254730 | 2232 nt | APPRIS P1 TSL 1 (best) BASIC | 21.14 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | MYBL2-201 | ENST00000217026 | 2639 nt | APPRIS P1 TSL 1 (best) BASIC | 21.14 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | ECHDC1-203 | ENST00000368291 | 1354 nt | TSL 2 BASIC | 21.14 | ■□□□□ 0.98 | | |
| CLDN9 | O95484 | RBMS1-205 | ENST00000409972 | 1815 nt | TSL 5 BASIC | 21.14 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | REEP5-202 | ENST00000379638 | 3326 nt | APPRIS P1 TSL 1 (best) BASIC | 21.14 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | SRD5A1P1-201 | ENST00000442297 | 786 nt | BASIC | 21.14 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | CCDC189-211 | ENST00000545825 | 1046 nt | TSL 1 (best) BASIC | 21.14 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | SH2D3A-201 | ENST00000245908 | 2296 nt | APPRIS P1 TSL 1 (best) BASIC | 21.14 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | ZNF410-206 | ENST00000540593 | 1722 nt | TSL 2 BASIC | 21.14 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | SHMT1-203 | ENST00000354098 | 1656 nt | TSL 1 (best) BASIC | 21.14 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | DOC2A-218 | ENST00000616445 | 2065 nt | APPRIS P1 TSL 1 (best) BASIC | 21.14 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | BCS1L-210 | ENST00000431802 | 2015 nt | APPRIS P1 TSL 2 BASIC | 21.14 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | POTED-202 | ENST00000620442 | 1988 nt | APPRIS ALT2 TSL 1 (best) BASIC | 21.14 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | AKT2-206 | ENST00000392038 | 5300 nt | APPRIS P1 TSL 1 (best) BASIC | 21.14 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | NEURL4-202 | ENST00000399464 | 5200 nt | APPRIS P4 TSL 1 (best) BASIC | 21.13 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | ADCK2-203 | ENST00000476491 | 2092 nt | TSL 1 (best) BASIC | 21.13 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | QDPR-206 | ENST00000508623 | 601 nt | TSL 3 BASIC | 21.13 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | AC010336.5-201 | ENST00000594308 | 317 nt | TSL 3 BASIC | 21.13 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | AL512631.2-201 | ENST00000604634 | 923 nt | BASIC | 21.13 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | DYRK1B-204 | ENST00000593685 | 2724 nt | APPRIS P3 TSL 5 BASIC | 21.13 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | KHDRBS2-201 | ENST00000281156 | 2332 nt | APPRIS P1 TSL 1 (best) BASIC | 21.13 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | IRX2-202 | ENST00000382611 | 2630 nt | APPRIS P1 TSL 1 (best) BASIC | 21.13 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | TBC1D22A-206 | ENST00000407381 | 1949 nt | TSL 5 BASIC | 21.13 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | MRGPRF-203 | ENST00000441623 | 2282 nt | APPRIS P1 TSL 2 BASIC | 21.13 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | DMPK-220 | ENST00000618091 | 2503 nt | TSL 1 (best) BASIC | 21.13 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | NELFCD-213 | ENST00000602795 | 2305 nt | APPRIS P1 TSL 1 (best) BASIC | 21.12 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | PHLDB3-207 | ENST00000599242 | 2286 nt | TSL 1 (best) BASIC | 21.12 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | IRX4-201 | ENST00000231357 | 2221 nt | APPRIS P1 TSL 1 (best) BASIC | 21.12 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | DES-201 | ENST00000373960 | 2248 nt | APPRIS P1 TSL 1 (best) BASIC | 21.12 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | CACNB3-205 | ENST00000547392 | 2237 nt | TSL 5 BASIC | 21.12 | ■□□□□ 0.97 | | |
| CLDN9 | O95484 | GPR6-202 | ENST00000414000 | 1945 nt | TSL 2 BASIC | 21.12 | ■□□□□ 0.97 | | |