Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
PCF11O94913 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.13
PCF11O94913 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC34.57■■■■□ 3.12
PCF11O94913 AC010141.3-201ENST00000456659 717 ntBASIC34.57■■■■□ 3.12
PCF11O94913 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC34.57■■■■□ 3.12
PCF11O94913 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
PCF11O94913 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC34.56■■■■□ 3.12
PCF11O94913 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC34.56■■■■□ 3.12
PCF11O94913 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC34.56■■■■□ 3.12
PCF11O94913 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC34.56■■■■□ 3.12
PCF11O94913 AC087239.1-201ENST00000622671 572 ntBASIC34.56■■■■□ 3.12
PCF11O94913 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC34.56■■■■□ 3.12
PCF11O94913 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC34.56■■■■□ 3.12
PCF11O94913 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
PCF11O94913 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC34.55■■■■□ 3.12
PCF11O94913 AC066615.1-201ENST00000640911 628 ntBASIC34.55■■■■□ 3.12
PCF11O94913 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
PCF11O94913 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC34.55■■■■□ 3.12
PCF11O94913 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC34.54■■■■□ 3.12
PCF11O94913 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC34.54■■■■□ 3.12
PCF11O94913 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC34.54■■■■□ 3.12
PCF11O94913 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC34.54■■■■□ 3.12
PCF11O94913 AC004854.2-201ENST00000608450 1441 ntBASIC34.54■■■■□ 3.12
PCF11O94913 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
PCF11O94913 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC34.53■■■■□ 3.12
PCF11O94913 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
PCF11O94913 DUSP8P3-201ENST00000399571 1760 ntBASIC34.53■■■■□ 3.12
PCF11O94913 ANOS2P-203ENST00000472227 1816 ntBASIC34.53■■■■□ 3.12
PCF11O94913 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
PCF11O94913 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
PCF11O94913 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC34.53■■■■□ 3.12
PCF11O94913 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC34.52■■■■□ 3.12
PCF11O94913 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
PCF11O94913 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC34.52■■■■□ 3.12
PCF11O94913 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
PCF11O94913 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC34.52■■■■□ 3.12
PCF11O94913 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
PCF11O94913 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
PCF11O94913 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
PCF11O94913 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC34.52■■■■□ 3.12
PCF11O94913 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
PCF11O94913 AC006015.1-201ENST00000429970 570 ntBASIC34.52■■■■□ 3.12
PCF11O94913 EMC9-206ENST00000560403 872 ntTSL 2 BASIC34.52■■■■□ 3.12
PCF11O94913 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC34.52■■■■□ 3.12
PCF11O94913 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
PCF11O94913 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC34.52■■■■□ 3.12
PCF11O94913 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC34.52■■■■□ 3.12
PCF11O94913 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC34.51■■■■□ 3.12
PCF11O94913 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC34.51■■■■□ 3.12
PCF11O94913 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.12
PCF11O94913 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC34.51■■■■□ 3.12
PCF11O94913 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.11
PCF11O94913 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
PCF11O94913 BX005040.4-201ENST00000637145 1518 ntBASIC34.5■■■■□ 3.11
PCF11O94913 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC34.5■■■■□ 3.11
PCF11O94913 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC34.5■■■■□ 3.11
PCF11O94913 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC34.5■■■■□ 3.11
PCF11O94913 RAP2CP1-201ENST00000605103 478 ntBASIC34.49■■■■□ 3.11
PCF11O94913 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC34.49■■■■□ 3.11
PCF11O94913 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC34.49■■■■□ 3.11
PCF11O94913 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC34.49■■■■□ 3.11
PCF11O94913 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC34.49■■■■□ 3.11
PCF11O94913 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
PCF11O94913 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
PCF11O94913 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC34.48■■■■□ 3.11
PCF11O94913 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC34.48■■■■□ 3.11
PCF11O94913 GXYLT1P2-201ENST00000433312 1230 ntBASIC34.48■■■■□ 3.11
PCF11O94913 DBI-210ENST00000542275 757 ntTSL 5 BASIC34.48■■■■□ 3.11
PCF11O94913 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC34.48■■■■□ 3.11
PCF11O94913 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC34.48■■■■□ 3.11
PCF11O94913 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC34.48■■■■□ 3.11
PCF11O94913 AP004607.4-201ENST00000530158 1459 ntBASIC34.47■■■■□ 3.11
PCF11O94913 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC34.47■■■■□ 3.11
PCF11O94913 GALNS-213ENST00000569433 723 ntTSL 3 BASIC34.47■■■■□ 3.11
PCF11O94913 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC34.47■■■■□ 3.11
PCF11O94913 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC34.46■■■■□ 3.11
PCF11O94913 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
PCF11O94913 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC34.46■■■■□ 3.11
PCF11O94913 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC34.46■■■■□ 3.11
PCF11O94913 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC34.46■■■■□ 3.11
PCF11O94913 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC34.46■■■■□ 3.11
PCF11O94913 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC34.45■■■■□ 3.11
PCF11O94913 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC34.45■■■■□ 3.11
PCF11O94913 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC34.45■■■■□ 3.11
PCF11O94913 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC34.45■■■■□ 3.11
PCF11O94913 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC34.45■■■■□ 3.11
PCF11O94913 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.1
PCF11O94913 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC34.45■■■■□ 3.1
PCF11O94913 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC34.45■■■■□ 3.1
PCF11O94913 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
PCF11O94913 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
PCF11O94913 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC34.44■■■■□ 3.1
PCF11O94913 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC34.44■■■■□ 3.1
PCF11O94913 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC34.43■■■■□ 3.1
PCF11O94913 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC34.43■■■■□ 3.1
PCF11O94913 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
PCF11O94913 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC34.43■■■■□ 3.1
PCF11O94913 STX7-201ENST00000367937 1090 ntTSL 5 BASIC34.43■■■■□ 3.1
PCF11O94913 TK2-208ENST00000545043 1120 ntTSL 2 BASIC34.43■■■■□ 3.1
PCF11O94913 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC34.42■■■■□ 3.1
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms