Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX3O60493 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SNX3O60493 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX3O60493 RNF165-205ENST00000588679 2904 ntBASIC21.61■■□□□ 1.05
SNX3O60493 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX3O60493 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
SNX3O60493 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SNX3O60493 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
SNX3O60493 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.6■■□□□ 1.05
SNX3O60493 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.6■■□□□ 1.05
SNX3O60493 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.6■■□□□ 1.05
SNX3O60493 AC022413.1-201ENST00000624602 984 ntBASIC21.6■■□□□ 1.05
SNX3O60493 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.6■■□□□ 1.05
SNX3O60493 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SNX3O60493 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.6■■□□□ 1.05
SNX3O60493 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
SNX3O60493 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.59■■□□□ 1.05
SNX3O60493 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SNX3O60493 RPS2P35-201ENST00000443417 897 ntBASIC21.59■■□□□ 1.05
SNX3O60493 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.59■■□□□ 1.05
SNX3O60493 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SNX3O60493 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SNX3O60493 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
SNX3O60493 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
SNX3O60493 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SNX3O60493 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.58■■□□□ 1.05
SNX3O60493 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SNX3O60493 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SNX3O60493 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SNX3O60493 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SNX3O60493 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SNX3O60493 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SNX3O60493 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SNX3O60493 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
SNX3O60493 AC087393.1-201ENST00000582896 145 ntBASIC21.58■■□□□ 1.05
SNX3O60493 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SNX3O60493 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
SNX3O60493 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.57■■□□□ 1.04
SNX3O60493 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SNX3O60493 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SNX3O60493 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC21.57■■□□□ 1.04
SNX3O60493 AC011551.1-201ENST00000614101 683 ntBASIC21.57■■□□□ 1.04
SNX3O60493 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SNX3O60493 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
SNX3O60493 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SNX3O60493 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SNX3O60493 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SNX3O60493 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.56■■□□□ 1.04
SNX3O60493 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.56■■□□□ 1.04
SNX3O60493 AC144652.1-201ENST00000609974 1624 ntBASIC21.56■■□□□ 1.04
SNX3O60493 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.56■■□□□ 1.04
SNX3O60493 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.56■■□□□ 1.04
SNX3O60493 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
SNX3O60493 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.56■■□□□ 1.04
SNX3O60493 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SNX3O60493 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SNX3O60493 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SNX3O60493 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SNX3O60493 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SNX3O60493 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SNX3O60493 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SNX3O60493 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SNX3O60493 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.55■■□□□ 1.04
SNX3O60493 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.55■■□□□ 1.04
SNX3O60493 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SNX3O60493 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SNX3O60493 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SNX3O60493 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SNX3O60493 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
SNX3O60493 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
SNX3O60493 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SNX3O60493 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SNX3O60493 AC009831.1-201ENST00000580420 1582 ntBASIC21.54■■□□□ 1.04
SNX3O60493 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SNX3O60493 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
SNX3O60493 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.54■■□□□ 1.04
SNX3O60493 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC21.54■■□□□ 1.04
SNX3O60493 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.54■■□□□ 1.04
SNX3O60493 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.54■■□□□ 1.04
SNX3O60493 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SNX3O60493 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
SNX3O60493 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.54■■□□□ 1.04
SNX3O60493 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SNX3O60493 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
SNX3O60493 LINC01960-201ENST00000563759 1884 ntBASIC21.54■■□□□ 1.04
SNX3O60493 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SNX3O60493 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SNX3O60493 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SNX3O60493 LINC01006-201ENST00000333319 2292 ntBASIC21.53■■□□□ 1.04
SNX3O60493 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SNX3O60493 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SNX3O60493 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SNX3O60493 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SNX3O60493 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.53■■□□□ 1.04
SNX3O60493 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.53■■□□□ 1.04
SNX3O60493 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SNX3O60493 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
SNX3O60493 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.53■■□□□ 1.04
SNX3O60493 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.53■■□□□ 1.04
SNX3O60493 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms