Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AL355802.2-201ENST00000402069 882 ntBASIC27.65■■■□□ 2.02
NPHP1O15259 PPP1R14BP3-201ENST00000509033 445 ntBASIC27.65■■■□□ 2.02
NPHP1O15259 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC27.65■■■□□ 2.02
NPHP1O15259 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC27.65■■■□□ 2.02
NPHP1O15259 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
NPHP1O15259 AC068587.7-201ENST00000641602 218 ntBASIC27.65■■■□□ 2.02
NPHP1O15259 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
NPHP1O15259 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC27.65■■■□□ 2.02
NPHP1O15259 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
NPHP1O15259 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
NPHP1O15259 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
NPHP1O15259 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
NPHP1O15259 EI24-211ENST00000534546 1544 ntTSL 2 BASIC27.64■■■□□ 2.02
NPHP1O15259 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
NPHP1O15259 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC27.64■■■□□ 2.02
NPHP1O15259 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC27.64■■■□□ 2.02
NPHP1O15259 TESC-206ENST00000541210 936 ntTSL 3 BASIC27.64■■■□□ 2.02
NPHP1O15259 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC27.64■■■□□ 2.02
NPHP1O15259 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC27.64■■■□□ 2.02
NPHP1O15259 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC27.64■■■□□ 2.02
NPHP1O15259 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
NPHP1O15259 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.02
NPHP1O15259 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC27.64■■■□□ 2.02
NPHP1O15259 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
NPHP1O15259 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
NPHP1O15259 AC142381.3-201ENST00000568208 1670 ntBASIC27.63■■■□□ 2.01
NPHP1O15259 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC27.63■■■□□ 2.01
NPHP1O15259 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
NPHP1O15259 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC27.63■■■□□ 2.01
NPHP1O15259 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC27.63■■■□□ 2.01
NPHP1O15259 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC27.63■■■□□ 2.01
NPHP1O15259 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC27.63■■■□□ 2.01
NPHP1O15259 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC27.63■■■□□ 2.01
NPHP1O15259 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
NPHP1O15259 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC27.62■■■□□ 2.01
NPHP1O15259 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
NPHP1O15259 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC27.62■■■□□ 2.01
NPHP1O15259 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC27.62■■■□□ 2.01
NPHP1O15259 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC27.62■■■□□ 2.01
NPHP1O15259 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC27.62■■■□□ 2.01
NPHP1O15259 AC104771.1-201ENST00000603335 964 ntBASIC27.62■■■□□ 2.01
NPHP1O15259 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC27.61■■■□□ 2.01
NPHP1O15259 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC27.61■■■□□ 2.01
NPHP1O15259 AL109923.1-201ENST00000618799 583 ntBASIC27.61■■■□□ 2.01
NPHP1O15259 WWOX-218ENST00000627394 894 ntTSL 5 BASIC27.61■■■□□ 2.01
NPHP1O15259 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
NPHP1O15259 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
NPHP1O15259 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
NPHP1O15259 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC27.6■■■□□ 2.01
NPHP1O15259 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC27.6■■■□□ 2.01
NPHP1O15259 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC27.6■■■□□ 2.01
NPHP1O15259 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
NPHP1O15259 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC27.6■■■□□ 2.01
NPHP1O15259 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
NPHP1O15259 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
NPHP1O15259 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
NPHP1O15259 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
NPHP1O15259 MED17-227ENST00000640521 2047 ntTSL 5 BASIC27.59■■■□□ 2.01
NPHP1O15259 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
NPHP1O15259 AC010141.3-201ENST00000456659 717 ntBASIC27.59■■■□□ 2.01
NPHP1O15259 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC27.59■■■□□ 2.01
NPHP1O15259 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC27.59■■■□□ 2.01
NPHP1O15259 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC27.59■■■□□ 2.01
NPHP1O15259 EMC9-206ENST00000560403 872 ntTSL 2 BASIC27.59■■■□□ 2.01
NPHP1O15259 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
NPHP1O15259 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
NPHP1O15259 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
NPHP1O15259 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC27.58■■■□□ 2.01
NPHP1O15259 METTL26-203ENST00000397664 604 ntTSL 2 BASIC27.58■■■□□ 2.01
NPHP1O15259 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC27.58■■■□□ 2.01
NPHP1O15259 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC27.58■■■□□ 2.01
NPHP1O15259 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC27.58■■■□□ 2.01
NPHP1O15259 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC27.58■■■□□ 2.01
NPHP1O15259 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC27.58■■■□□ 2.01
NPHP1O15259 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
NPHP1O15259 AC079630.1-202ENST00000618127 1840 ntBASIC27.57■■■□□ 2
NPHP1O15259 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC27.57■■■□□ 2
NPHP1O15259 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC27.57■■■□□ 2
NPHP1O15259 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
NPHP1O15259 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC27.57■■■□□ 2
NPHP1O15259 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC27.57■■■□□ 2
NPHP1O15259 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC27.57■■■□□ 2
NPHP1O15259 KRT18P11-201ENST00000435214 1283 ntBASIC27.57■■■□□ 2
NPHP1O15259 MAP2K4P1-201ENST00000438453 1195 ntBASIC27.57■■■□□ 2
NPHP1O15259 AC079140.4-201ENST00000507448 529 ntBASIC27.57■■■□□ 2
NPHP1O15259 SPI1-203ENST00000533030 661 ntTSL 2 BASIC27.57■■■□□ 2
NPHP1O15259 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC27.57■■■□□ 2
NPHP1O15259 AC011767.1-201ENST00000617410 1153 ntBASIC27.57■■■□□ 2
NPHP1O15259 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC27.57■■■□□ 2
NPHP1O15259 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
NPHP1O15259 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC27.57■■■□□ 2
NPHP1O15259 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC27.57■■■□□ 2
NPHP1O15259 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC27.57■■■□□ 2
NPHP1O15259 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC27.57■■■□□ 2
NPHP1O15259 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
NPHP1O15259 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
NPHP1O15259 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC27.56■■■□□ 2
NPHP1O15259 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC27.56■■■□□ 2
NPHP1O15259 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
NPHP1O15259 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC27.56■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms