Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.43■□□□□ 0.86
HMGN4O00479 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGN4O00479 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGN4O00479 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGN4O00479 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.43■□□□□ 0.86
HMGN4O00479 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGN4O00479 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HMGN4O00479 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.42■□□□□ 0.86
HMGN4O00479 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGN4O00479 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.42■□□□□ 0.86
HMGN4O00479 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HMGN4O00479 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.42■□□□□ 0.86
HMGN4O00479 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.42■□□□□ 0.86
HMGN4O00479 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGN4O00479 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HMGN4O00479 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGN4O00479 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.42■□□□□ 0.86
HMGN4O00479 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.42■□□□□ 0.86
HMGN4O00479 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGN4O00479 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HMGN4O00479 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGN4O00479 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGN4O00479 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGN4O00479 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGN4O00479 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGN4O00479 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGN4O00479 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
HMGN4O00479 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.41■□□□□ 0.86
HMGN4O00479 CA15P2-201ENST00000611168 834 ntBASIC20.41■□□□□ 0.86
HMGN4O00479 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGN4O00479 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.41■□□□□ 0.86
HMGN4O00479 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGN4O00479 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.41■□□□□ 0.86
HMGN4O00479 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGN4O00479 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
HMGN4O00479 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGN4O00479 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGN4O00479 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGN4O00479 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
HMGN4O00479 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGN4O00479 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGN4O00479 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.4■□□□□ 0.86
HMGN4O00479 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HMGN4O00479 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
HMGN4O00479 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.39■□□□□ 0.86
HMGN4O00479 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
HMGN4O00479 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HMGN4O00479 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.39■□□□□ 0.85
HMGN4O00479 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGN4O00479 AC006455.2-201ENST00000429931 906 ntBASIC20.39■□□□□ 0.85
HMGN4O00479 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HMGN4O00479 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGN4O00479 MIR3621-201ENST00000580529 85 ntBASIC20.39■□□□□ 0.85
HMGN4O00479 AL356740.2-201ENST00000601559 647 ntBASIC20.39■□□□□ 0.85
HMGN4O00479 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
HMGN4O00479 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGN4O00479 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGN4O00479 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.39■□□□□ 0.85
HMGN4O00479 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
HMGN4O00479 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HMGN4O00479 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HMGN4O00479 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGN4O00479 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.38■□□□□ 0.85
HMGN4O00479 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.38■□□□□ 0.85
HMGN4O00479 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGN4O00479 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.38■□□□□ 0.85
HMGN4O00479 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.38■□□□□ 0.85
HMGN4O00479 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.38■□□□□ 0.85
HMGN4O00479 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGN4O00479 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGN4O00479 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGN4O00479 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.38■□□□□ 0.85
HMGN4O00479 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGN4O00479 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGN4O00479 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGN4O00479 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGN4O00479 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HMGN4O00479 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.37■□□□□ 0.85
HMGN4O00479 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HMGN4O00479 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.37■□□□□ 0.85
HMGN4O00479 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.37■□□□□ 0.85
HMGN4O00479 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.37■□□□□ 0.85
HMGN4O00479 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.37■□□□□ 0.85
HMGN4O00479 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.37■□□□□ 0.85
HMGN4O00479 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
HMGN4O00479 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
HMGN4O00479 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGN4O00479 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
HMGN4O00479 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.36■□□□□ 0.85
HMGN4O00479 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
HMGN4O00479 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HMGN4O00479 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGN4O00479 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
HMGN4O00479 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
HMGN4O00479 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGN4O00479 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.36■□□□□ 0.85
HMGN4O00479 AC133637.1-201ENST00000624115 1537 ntBASIC20.36■□□□□ 0.85
HMGN4O00479 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.36■□□□□ 0.85
HMGN4O00479 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGN4O00479 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms