Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UPK1AO00322 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
UPK1AO00322 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.8■□□□□ 0.92
UPK1AO00322 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
UPK1AO00322 DUX4L4-201ENST00000566884 1269 ntBASIC20.8■□□□□ 0.92
UPK1AO00322 AL356740.2-201ENST00000601559 647 ntBASIC20.8■□□□□ 0.92
UPK1AO00322 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.8■□□□□ 0.92
UPK1AO00322 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UPK1AO00322 FBXW4P1-201ENST00000426721 2239 ntBASIC20.8■□□□□ 0.92
UPK1AO00322 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UPK1AO00322 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
UPK1AO00322 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.79■□□□□ 0.92
UPK1AO00322 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.79■□□□□ 0.92
UPK1AO00322 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.79■□□□□ 0.92
UPK1AO00322 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
UPK1AO00322 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.79■□□□□ 0.92
UPK1AO00322 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
UPK1AO00322 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.78■□□□□ 0.92
UPK1AO00322 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
UPK1AO00322 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.78■□□□□ 0.92
UPK1AO00322 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.78■□□□□ 0.92
UPK1AO00322 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UPK1AO00322 AC080038.3-201ENST00000623346 1952 ntBASIC20.78■□□□□ 0.92
UPK1AO00322 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UPK1AO00322 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
UPK1AO00322 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
UPK1AO00322 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UPK1AO00322 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UPK1AO00322 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
UPK1AO00322 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UPK1AO00322 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
UPK1AO00322 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UPK1AO00322 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UPK1AO00322 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.77■□□□□ 0.92
UPK1AO00322 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
UPK1AO00322 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
UPK1AO00322 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.77■□□□□ 0.92
UPK1AO00322 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
UPK1AO00322 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
UPK1AO00322 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
UPK1AO00322 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
UPK1AO00322 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
UPK1AO00322 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.76■□□□□ 0.91
UPK1AO00322 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
UPK1AO00322 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.76■□□□□ 0.91
UPK1AO00322 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
UPK1AO00322 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
UPK1AO00322 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
UPK1AO00322 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
UPK1AO00322 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.76■□□□□ 0.91
UPK1AO00322 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.76■□□□□ 0.91
UPK1AO00322 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.75■□□□□ 0.91
UPK1AO00322 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
UPK1AO00322 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
UPK1AO00322 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.75■□□□□ 0.91
UPK1AO00322 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.75■□□□□ 0.91
UPK1AO00322 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
UPK1AO00322 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.75■□□□□ 0.91
UPK1AO00322 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.75■□□□□ 0.91
UPK1AO00322 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
UPK1AO00322 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
UPK1AO00322 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
UPK1AO00322 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
UPK1AO00322 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
UPK1AO00322 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
UPK1AO00322 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
UPK1AO00322 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
UPK1AO00322 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
UPK1AO00322 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UPK1AO00322 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
UPK1AO00322 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UPK1AO00322 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
UPK1AO00322 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
UPK1AO00322 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
UPK1AO00322 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UPK1AO00322 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
UPK1AO00322 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
UPK1AO00322 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
UPK1AO00322 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
UPK1AO00322 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
UPK1AO00322 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.73■□□□□ 0.91
UPK1AO00322 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
UPK1AO00322 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.73■□□□□ 0.91
UPK1AO00322 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.73■□□□□ 0.91
UPK1AO00322 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
UPK1AO00322 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.73■□□□□ 0.91
UPK1AO00322 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
UPK1AO00322 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
UPK1AO00322 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
UPK1AO00322 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
UPK1AO00322 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
UPK1AO00322 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.72■□□□□ 0.91
UPK1AO00322 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
UPK1AO00322 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
UPK1AO00322 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
UPK1AO00322 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
UPK1AO00322 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
UPK1AO00322 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.72■□□□□ 0.91
UPK1AO00322 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
UPK1AO00322 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms