Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC38.56■■■■□ 3.76
CCDC88BA6NC98 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC38.56■■■■□ 3.76
CCDC88BA6NC98 AL355802.2-201ENST00000402069 882 ntBASIC38.56■■■■□ 3.76
CCDC88BA6NC98 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC38.56■■■■□ 3.76
CCDC88BA6NC98 AL050303.2-201ENST00000619798 666 ntBASIC38.56■■■■□ 3.76
CCDC88BA6NC98 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC38.56■■■■□ 3.76
CCDC88BA6NC98 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC38.56■■■■□ 3.76
CCDC88BA6NC98 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC38.56■■■■□ 3.76
CCDC88BA6NC98 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC38.55■■■■□ 3.76
CCDC88BA6NC98 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC38.55■■■■□ 3.76
CCDC88BA6NC98 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC38.55■■■■□ 3.76
CCDC88BA6NC98 AL109923.1-201ENST00000618799 583 ntBASIC38.55■■■■□ 3.76
CCDC88BA6NC98 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC38.55■■■■□ 3.76
CCDC88BA6NC98 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC38.55■■■■□ 3.76
CCDC88BA6NC98 AC011767.1-201ENST00000617410 1153 ntBASIC38.54■■■■□ 3.76
CCDC88BA6NC98 GAMT-205ENST00000640762 751 ntTSL 5 BASIC38.54■■■■□ 3.76
CCDC88BA6NC98 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC38.54■■■■□ 3.76
CCDC88BA6NC98 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC38.54■■■■□ 3.76
CCDC88BA6NC98 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC38.54■■■■□ 3.76
CCDC88BA6NC98 LINC00543-201ENST00000567234 1845 ntBASIC38.54■■■■□ 3.76
CCDC88BA6NC98 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC38.54■■■■□ 3.76
CCDC88BA6NC98 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC38.53■■■■□ 3.76
CCDC88BA6NC98 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC38.53■■■■□ 3.76
CCDC88BA6NC98 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC38.53■■■■□ 3.76
CCDC88BA6NC98 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC38.53■■■■□ 3.76
CCDC88BA6NC98 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC38.53■■■■□ 3.76
CCDC88BA6NC98 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC38.53■■■■□ 3.76
CCDC88BA6NC98 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC38.53■■■■□ 3.76
CCDC88BA6NC98 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC38.52■■■■□ 3.76
CCDC88BA6NC98 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC38.52■■■■□ 3.76
CCDC88BA6NC98 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC38.52■■■■□ 3.76
CCDC88BA6NC98 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC38.52■■■■□ 3.76
CCDC88BA6NC98 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC38.52■■■■□ 3.76
CCDC88BA6NC98 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC38.51■■■■□ 3.76
CCDC88BA6NC98 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC38.51■■■■□ 3.76
CCDC88BA6NC98 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC38.51■■■■□ 3.76
CCDC88BA6NC98 SPI1-203ENST00000533030 661 ntTSL 2 BASIC38.51■■■■□ 3.76
CCDC88BA6NC98 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC38.51■■■■□ 3.76
CCDC88BA6NC98 AL353803.4-201ENST00000565882 1934 ntBASIC38.51■■■■□ 3.76
CCDC88BA6NC98 AC004812.2-201ENST00000611079 2094 ntBASIC38.5■■■■□ 3.75
CCDC88BA6NC98 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC38.5■■■■□ 3.75
CCDC88BA6NC98 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC38.5■■■■□ 3.75
CCDC88BA6NC98 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC38.5■■■■□ 3.75
CCDC88BA6NC98 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC38.5■■■■□ 3.75
CCDC88BA6NC98 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC38.5■■■■□ 3.75
CCDC88BA6NC98 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC38.5■■■■□ 3.75
CCDC88BA6NC98 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC38.49■■■■□ 3.75
CCDC88BA6NC98 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC38.49■■■■□ 3.75
CCDC88BA6NC98 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC38.49■■■■□ 3.75
CCDC88BA6NC98 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC38.49■■■■□ 3.75
CCDC88BA6NC98 AC087239.1-201ENST00000622671 572 ntBASIC38.49■■■■□ 3.75
CCDC88BA6NC98 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC38.49■■■■□ 3.75
CCDC88BA6NC98 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC38.49■■■■□ 3.75
CCDC88BA6NC98 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC38.48■■■■□ 3.75
CCDC88BA6NC98 ESRRAP2-201ENST00000418437 1549 ntBASIC38.48■■■■□ 3.75
CCDC88BA6NC98 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC38.48■■■■□ 3.75
CCDC88BA6NC98 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC38.48■■■■□ 3.75
CCDC88BA6NC98 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC38.48■■■■□ 3.75
CCDC88BA6NC98 AC079140.4-201ENST00000507448 529 ntBASIC38.48■■■■□ 3.75
CCDC88BA6NC98 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC38.48■■■■□ 3.75
CCDC88BA6NC98 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC38.48■■■■□ 3.75
CCDC88BA6NC98 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC38.48■■■■□ 3.75
CCDC88BA6NC98 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC38.48■■■■□ 3.75
CCDC88BA6NC98 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC38.47■■■■□ 3.75
CCDC88BA6NC98 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC38.47■■■■□ 3.75
CCDC88BA6NC98 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC38.47■■■■□ 3.75
CCDC88BA6NC98 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC38.47■■■■□ 3.75
CCDC88BA6NC98 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC38.47■■■■□ 3.75
CCDC88BA6NC98 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC38.47■■■■□ 3.75
CCDC88BA6NC98 METTL26-203ENST00000397664 604 ntTSL 2 BASIC38.47■■■■□ 3.75
CCDC88BA6NC98 KRT18P11-201ENST00000435214 1283 ntBASIC38.47■■■■□ 3.75
CCDC88BA6NC98 GUSBP6-202ENST00000438529 1198 ntBASIC38.47■■■■□ 3.75
CCDC88BA6NC98 TESC-206ENST00000541210 936 ntTSL 3 BASIC38.47■■■■□ 3.75
CCDC88BA6NC98 WT1-AS_3.1-201ENST00000613262 234 ntBASIC38.47■■■■□ 3.75
CCDC88BA6NC98 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC38.47■■■■□ 3.75
CCDC88BA6NC98 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC38.47■■■■□ 3.75
CCDC88BA6NC98 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC38.47■■■■□ 3.75
CCDC88BA6NC98 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC38.46■■■■□ 3.75
CCDC88BA6NC98 OXCT2P1-201ENST00000447263 1535 ntBASIC38.46■■■■□ 3.75
CCDC88BA6NC98 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC38.46■■■■□ 3.75
CCDC88BA6NC98 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC38.46■■■■□ 3.75
CCDC88BA6NC98 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC38.46■■■■□ 3.75
CCDC88BA6NC98 CREM-210ENST00000374721 2020 ntTSL 5 BASIC38.46■■■■□ 3.75
CCDC88BA6NC98 AC020928.2-201ENST00000588717 2197 ntBASIC38.46■■■■□ 3.75
CCDC88BA6NC98 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC38.45■■■■□ 3.75
CCDC88BA6NC98 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC38.45■■■■□ 3.75
CCDC88BA6NC98 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC38.44■■■■□ 3.74
CCDC88BA6NC98 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC38.44■■■■□ 3.74
CCDC88BA6NC98 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC38.44■■■■□ 3.74
CCDC88BA6NC98 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC38.44■■■■□ 3.74
CCDC88BA6NC98 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC38.44■■■■□ 3.74
CCDC88BA6NC98 ASL-203ENST00000380839 1765 ntTSL 5 BASIC38.43■■■■□ 3.74
CCDC88BA6NC98 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC38.43■■■■□ 3.74
CCDC88BA6NC98 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC38.43■■■■□ 3.74
CCDC88BA6NC98 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC38.43■■■■□ 3.74
CCDC88BA6NC98 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC38.42■■■■□ 3.74
CCDC88BA6NC98 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC38.42■■■■□ 3.74
CCDC88BA6NC98 AC142086.2-201ENST00000569753 217 ntBASIC38.42■■■■□ 3.74
CCDC88BA6NC98 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC38.42■■■■□ 3.74
CCDC88BA6NC98 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC38.42■■■■□ 3.74
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms