Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
PCDHA1Q9Y5I3 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHA1Q9Y5I3 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC25.27■■□□□ 1.64
PCDHA1Q9Y5I3 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC25.27■■□□□ 1.64
PCDHA1Q9Y5I3 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHA1Q9Y5I3 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHA1Q9Y5I3 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC25.27■■□□□ 1.64
PCDHA1Q9Y5I3 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHA1Q9Y5I3 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC25.27■■□□□ 1.64
PCDHA1Q9Y5I3 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC25.27■■□□□ 1.64
PCDHA1Q9Y5I3 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC25.27■■□□□ 1.64
PCDHA1Q9Y5I3 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHA1Q9Y5I3 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHA1Q9Y5I3 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC25.27■■□□□ 1.64
PCDHA1Q9Y5I3 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC25.27■■□□□ 1.64
PCDHA1Q9Y5I3 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
PCDHA1Q9Y5I3 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA1Q9Y5I3 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA1Q9Y5I3 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC25.26■■□□□ 1.63
PCDHA1Q9Y5I3 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA1Q9Y5I3 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC25.26■■□□□ 1.63
PCDHA1Q9Y5I3 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC25.26■■□□□ 1.63
PCDHA1Q9Y5I3 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC25.26■■□□□ 1.63
PCDHA1Q9Y5I3 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA1Q9Y5I3 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC25.26■■□□□ 1.63
PCDHA1Q9Y5I3 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC25.26■■□□□ 1.63
PCDHA1Q9Y5I3 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC25.25■■□□□ 1.63
PCDHA1Q9Y5I3 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
PCDHA1Q9Y5I3 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC25.25■■□□□ 1.63
PCDHA1Q9Y5I3 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC25.25■■□□□ 1.63
PCDHA1Q9Y5I3 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHA1Q9Y5I3 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHA1Q9Y5I3 NME4-202ENST00000382940 766 ntTSL 3 BASIC25.25■■□□□ 1.63
PCDHA1Q9Y5I3 NME4-211ENST00000620944 1193 ntTSL 2 BASIC25.25■■□□□ 1.63
PCDHA1Q9Y5I3 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC25.25■■□□□ 1.63
PCDHA1Q9Y5I3 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHA1Q9Y5I3 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHA1Q9Y5I3 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHA1Q9Y5I3 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC25.25■■□□□ 1.63
PCDHA1Q9Y5I3 RARA-203ENST00000394086 2008 ntTSL 2 BASIC25.25■■□□□ 1.63
PCDHA1Q9Y5I3 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHA1Q9Y5I3 NFE2L3P1-201ENST00000588207 1959 ntBASIC25.24■■□□□ 1.63
PCDHA1Q9Y5I3 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC25.24■■□□□ 1.63
PCDHA1Q9Y5I3 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
PCDHA1Q9Y5I3 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
PCDHA1Q9Y5I3 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC25.24■■□□□ 1.63
PCDHA1Q9Y5I3 AK1-201ENST00000223836 736 ntTSL 3 BASIC25.24■■□□□ 1.63
PCDHA1Q9Y5I3 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC25.24■■□□□ 1.63
PCDHA1Q9Y5I3 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
PCDHA1Q9Y5I3 LHPP-203ENST00000392757 840 ntTSL 3 BASIC25.24■■□□□ 1.63
PCDHA1Q9Y5I3 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC25.24■■□□□ 1.63
PCDHA1Q9Y5I3 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC25.24■■□□□ 1.63
PCDHA1Q9Y5I3 SP2-202ENST00000613139 908 ntTSL 5 BASIC25.24■■□□□ 1.63
PCDHA1Q9Y5I3 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC25.23■■□□□ 1.63
PCDHA1Q9Y5I3 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC25.23■■□□□ 1.63
PCDHA1Q9Y5I3 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHA1Q9Y5I3 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC25.23■■□□□ 1.63
PCDHA1Q9Y5I3 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHA1Q9Y5I3 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHA1Q9Y5I3 AC097381.1-201ENST00000429019 1296 ntBASIC25.23■■□□□ 1.63
PCDHA1Q9Y5I3 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC25.23■■□□□ 1.63
PCDHA1Q9Y5I3 MIR6821-201ENST00000617625 74 ntBASIC25.23■■□□□ 1.63
PCDHA1Q9Y5I3 AL358852.1-201ENST00000623174 1268 ntBASIC25.23■■□□□ 1.63
PCDHA1Q9Y5I3 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC25.23■■□□□ 1.63
PCDHA1Q9Y5I3 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHA1Q9Y5I3 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHA1Q9Y5I3 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHA1Q9Y5I3 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC25.22■■□□□ 1.63
PCDHA1Q9Y5I3 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHA1Q9Y5I3 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC25.22■■□□□ 1.63
PCDHA1Q9Y5I3 USP45-205ENST00000472914 1617 ntTSL 5 BASIC25.22■■□□□ 1.63
PCDHA1Q9Y5I3 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHA1Q9Y5I3 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC25.21■■□□□ 1.63
PCDHA1Q9Y5I3 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC25.21■■□□□ 1.63
PCDHA1Q9Y5I3 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC25.21■■□□□ 1.63
PCDHA1Q9Y5I3 AC012414.1-201ENST00000556676 535 ntBASIC25.21■■□□□ 1.63
PCDHA1Q9Y5I3 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHA1Q9Y5I3 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC25.21■■□□□ 1.63
PCDHA1Q9Y5I3 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHA1Q9Y5I3 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHA1Q9Y5I3 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.63
PCDHA1Q9Y5I3 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
PCDHA1Q9Y5I3 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHA1Q9Y5I3 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHA1Q9Y5I3 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
PCDHA1Q9Y5I3 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
PCDHA1Q9Y5I3 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHA1Q9Y5I3 AC010141.3-201ENST00000456659 717 ntBASIC25.2■■□□□ 1.62
PCDHA1Q9Y5I3 AL354811.1-201ENST00000610286 706 ntBASIC25.2■■□□□ 1.62
PCDHA1Q9Y5I3 MIR6084-201ENST00000622012 110 ntBASIC25.2■■□□□ 1.62
PCDHA1Q9Y5I3 AC087239.1-201ENST00000622671 572 ntBASIC25.2■■□□□ 1.62
PCDHA1Q9Y5I3 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHA1Q9Y5I3 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHA1Q9Y5I3 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
PCDHA1Q9Y5I3 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHA1Q9Y5I3 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC25.2■■□□□ 1.62
PCDHA1Q9Y5I3 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHA1Q9Y5I3 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
PCDHA1Q9Y5I3 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC25.19■■□□□ 1.62
PCDHA1Q9Y5I3 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC25.19■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms